RNA id: XM_039793025.1


Basic Information

Item Value
RNA id XM_039793025.1
length 1968
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120554247
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16380312 ~ 16386295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGTAGCGGAAGTAGTGTTTGTGTTTCCGGGCCCCGGAAGATGCTACGACCTCCGTCCCATTGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGGGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGCTTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGGCTGGACCAGGAGGACACAAAGCCCCCCCACattaaagaagaacaggaggaACTCCGGATCAGTCAGAATgaagagcagcttcaagggctggaggaggctgatatcaccaagttcacattcactcctgtccctgtgaagagcgaagatgatgaagagaaacCTCAGTtttcacagcttcatcaaatgCAAATTGAACAGATcaaaacagaagctgatggagaggattgtggaggaccagaactgGTCATGAAATCCGATCCAGATACAcatttacaaccagagactgatgACGAGACTGGAGATTCTTCTGAatctgagactgatgacagtgctgatttgaaggagaccagagaacctcagtcaggtttaaactctctgaataaTGATGCATTCCCTGTTAGTGATTCAGGATGTACTACCGGTGAGAAAGCAGTTAGCTTCTCTGAGTATGGGAAAAGATTTGGCACCAATGGAGATGTGACGAGGCACATGAGATCTCATACAGGAGAAAAAacatttagctgctcagtctgtaagaaagcttttgGACGGAGTGGTCATTTACAtagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagTGAGTGGAAGTTTAAAGAGACACATGACaattcacacaggagagaaaccatttagctgctcagtctgtaagaaaccTTATACGGAGCGTGCAGCTTTAAAGatacacatgagaatccacacaggagagagaccaTTTATCTGCTCAGTCTGCAAGGACGATTTTAGAGATAAGAAAGGTTTAAAGAtgcacatgagaatccacacaggagagagaccatttagctgctcagtctgtaagaaagatTTTATAGAGAGTGGAACCTTAAAGAGACACATGAGGACCCAACACGAGAGTGTTACAAGCTCCCCCCTTGTTTTGCTTCTCCCTGTCTGCTCTACTCAGGTGATCCTGATTTAATCGTTAGTGGTTGGCTTAAGGAAGGCTGGAGGACTCTTTCAGACTGAAGCAGCTGTgcaccagtttgtttgtttatttatttgggGATTGAGGTCTGAGGGGTATGGCACAAGACCAAGATGAAATTTGGAACTAAATTCATGATATTTGGATATTGTACTATAAATACAGATGTATAAATagtaattgataatgaaataattgaaagagtctatgaaaataaatgtctgGGTGACCACAAACTGTGCTAGAAGCCCCGTATTAAATATCTGTGCATGAAGTTGGCCAGGAGCATTGGTATATTGAACAAAACTAGATACATATTGAACCAGAATACACTACATACTCTGTACTACATGCAGCTACGCTGTAGCTAAAttggaaagagaggactgtgagtttgcagtgaacatgccgtttttttaggtcgggtagagtTGACGCTCGTATGTACCGTAAGTAGAAAGACGTGAGTTTGGCCACTTCTTCGTGACCTTCTTCTGAATGTATTGACTGGAACCCTCTGAAGCGTATACTGCCCCCATCAGATCCGGAAGTGGCGCAGCGCCGATGCTGCTAACACTGGCATCATCGCCAACGGTGCCAACGGTACATAAAAAAATGGGCATTGTCGGTGTTTTATAATTT

Function

GO: NA

KEGG:

id description
K09191 GTF3A; general transcription factor IIIA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319478 lncRNA downstream 27455 16349688 ~ 16352857 (-) False LOC120554218
XR_005638349.1 lncRNA downstream 35047 16340797 ~ 16345265 (-) True LOC120554275
TU319473 lncRNA downstream 56076 16322888 ~ 16324236 (-) True G235351
TU319330 lncRNA downstream 58795 16321111 ~ 16321517 (-) True G235242
TU319295 lncRNA downstream 134915 16245127 ~ 16245397 (-) True G235225
XR_005638360.1 lncRNA upstream 119296 16505591 ~ 16506631 (-) True LOC120554287
XR_005638345.1 lncRNA upstream 176509 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA upstream 176509 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA upstream 176519 16562814 ~ 16567015 (-) False LOC120554273
TU319516 lncRNA upstream 225688 16611983 ~ 16613711 (-) True G235387
XM_039792972.1 mRNA downstream 14951 16356822 ~ 16365361 (-) True LOC120554221
XM_039792973.1 mRNA downstream 15030 16356822 ~ 16365282 (-) False LOC120554221
XM_039792971.1 mRNA downstream 18099 16356822 ~ 16362213 (-) False LOC120554221
XM_039792965.1 mRNA downstream 27435 16326093 ~ 16352877 (-) True LOC120554218
XM_039792928.1 mRNA downstream 70301 16289101 ~ 16310011 (-) True LOC120554198
XM_039792956.1 mRNA upstream 24465 16410760 ~ 16854135 (-) False LOC120554212
XM_039792957.1 mRNA upstream 24465 16410760 ~ 16432432 (-) False LOC120554212
XM_039792953.1 mRNA upstream 24465 16410760 ~ 16432432 (-) False LOC120554212
XM_039792954.1 mRNA upstream 24465 16410760 ~ 16432364 (-) False LOC120554212
XM_039792955.1 mRNA upstream 24465 16410760 ~ 16432358 (-) False LOC120554212
XR_005638580.1 other downstream 5347 16374777 ~ 16374965 (-) True LOC120554797
unassigned_transcript_1642 other downstream 26363 16353877 ~ 16353949 (-) True trnat-cgu_15
TU319322 other downstream 105012 16274758 ~ 16275300 (-) False LOC120554197
XR_005638332.1 other downstream 108840 16265525 ~ 16271472 (-) False LOC120554197
TU319316 other downstream 109192 16265339 ~ 16271120 (-) False LOC120554197
unassigned_transcript_1643 other upstream 477 16386772 ~ 16386845 (-) True trnat-agu_40
unassigned_transcript_1644 other upstream 70093 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1645 other upstream 114163 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1647 other upstream 118563 16504858 ~ 16504930 (-) True trnat-cgu_16
TU319517 other upstream 225688 16611983 ~ 16616316 (-) False G235387

Expression Profile