RNA id: XM_039793026.1


Basic Information

Item Value
RNA id XM_039793026.1
length 1804
RNA type mRNA
GC content 0.56
exon number 4
gene id LOC120554248
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17357447 ~ 17364065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCAATCATAAAGCCATGAGGCCCGAGGACAGGCTCACACCGGACAGCGTCGCTGCACTggcctctccttctctccaggATGCTCCTCTTCCTCGGCCTGGCCGCCCTCTTCGCCGCGAGCGTCCCCACGGAGACCAACCAGACCTCCAGGCCGCCGGCCGAGAGCGGAGAGCAGTGCATGGCCTGCGACTTCCGGGAGCACAGCAAGCAGATGAGGCTCCACAGCATCAAGTCGCAGATCCTCAGCATCCTGCGGCTCCAACAGGCCCCCAACATCAGCCGGGACATGATCCGCCAGCTGCTCCCCAAAGCGCCCCCTCTGACGCAGCTCCTGGACCAGTACGACCCGCGGGTGGAGGACGAGGACCACGCCACGACAGAGACCATCATCACCATGGCTACCAAGCTTGATCCGACCGCCCAGGAAGAGTTGTCCTCCTGTTGTGTTTTCAACCTCAGCCCGAAGATCCAACCCAAAAACATCCTGCGCGCTCAGCTTTGGGTGCACCTGCGGCCGGCCGACGTGGTCACCACCGTCTTCTTGCAGATCTCTCGCCTCAGACCCGGGAAGGAGGGAAACGGCACCCGGGTCCGAGTCCGCTCCCTGAAGATTGACACCGACGCCGGCTCCGGGTCCTGGCAGAGCATCGACATCAAGTCGCTGCTGCAGGCTTGGCTGCGTCAGCCGGAGGCCAACTACGGGATCGAGATCAACGCCTACGACTCCAGTGGAGAAGATCTGGCTGTCACCTCGGCGGAGCCTGGAGAGGAAGGACTGCAACCGTTCATCGAAGTGAAGATCCTCGACACGCCCAAGAGATCCCGCCGCGACTCGGGCCTCAACTGCGACGAGGAGTCGGCAGAGACCCGCTGCTGCCGCTACCCGCTCACCGTCGACTTCGAGGAGTTCGGCTGGGACTGGATCATCGCGCCCAAGCGCTACCGGGCCAACTACTGCTCGGGGGAGTGCGAGTACATGCACCTGCAGCAGTACCCACATGCCCACCTGGTGAACAAGGCCAACCCGCGGGGCACAGCGGGGCCCTGCTGCACTCCTACCAAGATGTCGCCCATCAACATGCTCTACTTCAACCGCAAGGAGCAGATCATCTACGGAAAGATCCCGTCCATGGTGGTGGACCACTGCGGCTGCTCCTGAGGGAACCCAGGCGTCCGCGGGACGACGGCTCGGTCACAGAAGCtttgtttttctgcaaaagtGATGCAAACTACTCTCTATTTTGTTACTAAAACTTAGACCCAGCAACATCCCGTCTATGAAAGAGACGCAAGGACAGGACTCCCGAAGTTGTTTGAAGTTTCGTACCCTgtgcttttttgttttgccaATTTCAGACCAAACACTCTGAAACAagagatgtttttttctgaaggATCAACTAACTCCTGCCGCTTTCTGTCCTCCCGTCCTTATGAAAACGTGTCCTGATTTGAGCCTTGACCAGAACAAACCCTGCAGGGCGTCTTCCACatgtgcctttattttgaaaaacatgaACCCTTAAATGCCTCCGAGCTGACGGGTCGACCCCGTCCCAAAAGCTTGTTTGCAAACTCCCTCGCTGTGATTTGTTCTCGAGAGAAAGTCAGCAATGTTCTTCCTCTGAGATGGCTGCCCTGtcttaatataataaatgcaTAGTGAGTTGACGACCAGCACAAAGGGAAAAGTGAGAGGCTGAGAGACCTGTCAATCAAGCTAAACTTCTAATCGAATGTTAACGGTACCCCTGTGAGTATAgaatgccgttttttttttttttttcccaatattaaataaa

Function

GO: NA

KEGG:

id description
K04669 TGFBRX; TGF-beta receptor, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319675 lncRNA upstream 7361 17349865 ~ 17350086 (+) True G235530
TU319646 lncRNA upstream 11524 17345465 ~ 17345923 (+) True G235501
TU319642 lncRNA upstream 43582 17313009 ~ 17313865 (+) True G235497
XR_005638358.1 lncRNA upstream 152779 17183355 ~ 17204668 (+) True LOC120554285
XR_005638359.1 lncRNA upstream 210955 17133116 ~ 17146492 (+) True LOC120554286
TU319694 lncRNA downstream 16840 17380905 ~ 17381200 (+) True G235547
TU319695 lncRNA downstream 18790 17382855 ~ 17383085 (+) True G235548
TU319702 lncRNA downstream 23566 17387631 ~ 17391423 (+) True G235552
TU319740 lncRNA downstream 127206 17491271 ~ 17494315 (+) True G235578
TU319750 lncRNA downstream 145428 17509493 ~ 17509695 (+) True G235587
XM_039792945.1 mRNA upstream 14418 17340047 ~ 17343029 (+) True LOC120554209
XM_039792988.1 mRNA upstream 50509 17289184 ~ 17306938 (+) True LOC120554229
XM_039792949.1 mRNA upstream 89150 17221309 ~ 17268297 (+) False LOC120554211
XM_039792931.1 mRNA downstream 411467 17775532 ~ 17807753 (+) True LOC120554200
XM_039793052.1 mRNA downstream 471829 17835894 ~ 17836902 (+) True LOC120554264
XM_039792923.1 mRNA downstream 518400 17882465 ~ 17935473 (+) True als2b
XM_039792924.1 mRNA downstream 518400 17882465 ~ 17935473 (+) False als2b
XM_039792925.1 mRNA downstream 518400 17882465 ~ 17935473 (+) False als2b
unassigned_transcript_1702 other upstream 252234 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 252806 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 283364 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 283722 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 284327 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 589074 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 803221 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 812760 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2632734 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 2844264 20208329 ~ 20233795 (+) False prkx

Expression Profile