RNA id: XM_039793038.1


Basic Information

Item Value
RNA id XM_039793038.1
length 1551
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120554254
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17113416 ~ 17124906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcagttcatctcgaacgagcctagaGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGAGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgCTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGTGGAGAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACCCAAagcccccacacattaaagaagaacaggaggaACTCCTGATCAGTCAGGATgaagagcagcttcaagggccgGAGGAGGCTGATGTCACCAaattcccattcactcctgtccctgtgaagagtgaagatgatgaagagaaacctatgttctcacagcttcatcaaagacaaactgaagagataaaaacagaagctgatgaagaggagtgtggaggaccagaaccagccatgAAATCAGATCCAGATACACTTTCACAACCAGATACTgatgaacctgagactgatgacagtgctgattggaaagagaccagagaacctcagtcaggtttaaactctctgaataaTGATAGATTCCCTGTTAGTGATTCAGGATGTACTACTGGTGAGAAACCATTTAggtgctctgagtgtgggaaaagatttggcACCAGTATAAATCTAAAgagacacatgagaactcatGAAGGcgagaaaccatttagctgctcagtctgtaagaaagcttttgGACAGAGTGGAAACTTACAGatacacatgagaatccacacaggagagacaccatttagctgctcaatctgtaagaaagcttttacagAAAGTGGGAATTTAAagagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagATAGTGGaaatttacagaaacacatgagaatccacaaaGATGAGAAACAATGTAGCTGCTCAATTTGTAACAAAGATTTTATACTGGGTGGAAACTTACAGGCACCCATGAGAACCCACCATGCGAGTGTTACAAGCTCCCCTCTTGTTTAGCTTCTCCCTGTCTGCTCTACTCAGGTGATCCTGATTTGATAGTTAGTGGTTGGCTCCGCCCCTTGTACTTAAGGAAGGCTGGAGGACTCATTCAGAATGAAGCAGCTGTGCACCAGTCTGTATATTTTTGGGGGGTTTGAGGTCTGAGGGGTATGGCACACAACCAAGATGACATTTCGAACTTAATTCATGATATTTGGATATTGAACTATAAATACACATGTATAAATAGTAATAGataatgaaataattgaaaGTCCATGAAATGTTACACTCAAGATCGCATCTGAACAGTCAAAAATTCTCGACtgagtttaaaacttttacagccaactTATTAAAATGTCGGGTTTTAATCGGGCgtggtgttaattttgtcacctatttttaatttagtcttagtcttgtgccaaatgtccgTGTT

Function

GO: NA

KEGG:

id description
K09214 GL; glass

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319447 lncRNA upstream 177750 16934799 ~ 16935666 (+) True G235332
TU319439 lncRNA upstream 180832 16880639 ~ 16932584 (+) False LOC120554243
TU319436 lncRNA upstream 272587 16840186 ~ 16840829 (+) True G235321
TU319398 lncRNA upstream 518567 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 547372 16563427 ~ 16566044 (+) True LOC120554281
XR_005638359.1 lncRNA downstream 8210 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 58449 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 188103 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 220559 17345465 ~ 17345923 (+) True G235501
TU319675 lncRNA downstream 224959 17349865 ~ 17350086 (+) True G235530
XM_039793007.1 mRNA upstream 13935 17057688 ~ 17099481 (+) True LOC120554236
XM_039792940.1 mRNA upstream 113286 16981037 ~ 17000130 (+) True LOC120554204
XM_039793018.1 mRNA upstream 180810 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA upstream 180810 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA upstream 180810 16917963 ~ 16932606 (+) True LOC120554243
XM_039792548.1 mRNA downstream 44479 17169385 ~ 17178813 (+) True LOC120553999
XM_039792949.1 mRNA downstream 96403 17221309 ~ 17268297 (+) False LOC120554211
XM_039792948.1 mRNA downstream 109141 17234047 ~ 17268297 (+) True LOC120554211
XM_039792951.1 mRNA downstream 109144 17234050 ~ 17262624 (+) False LOC120554211
XM_039792950.1 mRNA downstream 112088 17236994 ~ 17268297 (+) False LOC120554211
unassigned_transcript_1702 other upstream 8203 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 8775 17104568 ~ 17104641 (+) True trnat-agu_66
unassigned_transcript_1700 other upstream 39333 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1699 other upstream 39691 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1698 other upstream 40296 17073048 ~ 17073120 (+) True trnat-ugu_47
XR_005638333.1 other downstream 828233 17953139 ~ 17960562 (+) True LOC120554216
TU319966 other downstream 1042380 18167286 ~ 18171954 (+) True G235775
TU319969 other downstream 1051919 18176825 ~ 18181812 (+) True G235778
TU320432 other downstream 2871893 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 3083423 20208329 ~ 20233795 (+) False prkx

Expression Profile