RNA id: XM_039793047.1


Basic Information

Item Value
RNA id XM_039793047.1
length 2296
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC120554260
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17718997 ~ 17732940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCGTTGTCAGCTGCACAGTTTCAGACATATGCAGGCTGTGTAGAATCAGAAAGGGTGGAGTCAGCACCCCGATTGGCCGGAGGGGGAAGAGATCCGGACCCTGGGGACTGACACCacgcccgtgtgtgtgtgtgtgagtgggtggtgtgtgtgtgtgtgtgtgtgtttcagcatACGCTCTgttgtgtttcttcttcttcttcccattCTTCCTCTTCGCCTCATAACtgGGTTTTCTTtctgctcaggttgaaatgACAGCACCCACCTGGTCTACTGGTGCGACTCCTGCCCATGCTGCTCTATCTACAGCAGCCCAAACCGGGGCTACTCTGTCTGAGGTTTTGACCGAGATGGTGACGACGAAAGGTATGGACATTTCCATGACTCCTGCCCCTGACGCTATGTCTCTACCTCCAACAATTGAAGCCTGGACTcgtcttcctccttctcttgtGACAGAGGCAGTGACGAAGGCAGCCGAAACCGGGGCTACTCTGTCTGAGGTTTGGACCGAGATGGTGACGGAAGGTATGGGCATTCCCACCACTCCTGCCCCTGCCCCTGCGGCTCTACCTCCAGCAACTGAAGTCTGGACTCGTCTTCCTCTTGTGACAGAGGCAGTGACGAAGGGCATCGCCCTGGACGATGGAGCTTTTGCAGCCCTGATCGGAGGGATCGTCTGCATCGCGCTGCTGCTGGTCATCTGCATCATAGTGTTGTTGCTGTGGCATTTGTCCAGACATAAAGGCTCGTACGTCACCAACGAGATGGACGACGACGAGATGGACGACGAGGAGTCCGTCGGTTCCGATACGGCGCTCCAAAGCCGGGAACCTCTGGAGACCAAAGAGGACGCCTGAAGACTACAACGGAAACATACACAGAGAACACTTTGAAAACACAGACTTGAGTTGAGTTGGCGAGGACTCAAGAGCTTTTGTTACACCGAGGAGACGCGTTTTTCACAAAAAGTAGCCAATTTCCAAAAGCAACTTTGGACATTTGCTGCCACCGAAAGGCCGCAAGACGAACTTCACTTCCCGGCCGTTTTAGTTCAGTGACATTATTGGATGAAACTCATCGATTGATGAATAAATGACGTGAAAGGCTGCTGCACCGGTTGCATTGTGACCCTAACGCAAGATTGACAACGTTTATTTGTAATTTGTTtcaaaacgcaaaaaaaaaaatctaatgttttatttagcataaTTACTTTGTAATCCTATGTaatctatcctatccaatatttcctatattgtGCCACGCCACTTTAAAACaatcctggaatcgcccctgAGAATAACTAACAGTAATTTAAGTGGCATTTCCTGTTGAGGGCAGATCTTTTGCCTCACATTATTCCGAAGGCGTACTATCTTGCCCCGCTTCCGTCCTGAATCTGGTCctgttaaaaagtaaaagaCTGGACAAAATCTTTTGACACCAGAACTGCCAGATGCTGGTCAACATTAACTGGCTGCTGGTTGCTTTCCACCCTGGTTGTTGTAATATTTTTAGGGACTTAATTAAGATGGTCCGATTCCATTTTTTCCTTCCCGATACCGTTTCCAATACCTGAACTTGCTGTCGGCCGTTACCGATttgataccagtgtgtcatatattttattatgttttaacagctgtgtactactatccctgtatggatgtgatatgatttctatctttgttaaactctttgtgaaacatgaacaaccccaaacaatgaatgccacagaactttcttttattatctagtttgacagtcagtcataatggaaaaaaaaacatacataaactactttaaaagtAGATTTTCCTCCGAGCTAAGTTACATTGTATGGGATCGCTGCATAAACTCTAGTACTCTCTGATACccataccagcattttaggccgTATCGGTGACTCTTCCaacactggtatcggtatcggaacatttCTAACTCGGACTAACATAACACACTGTTATGAATCAGCTGTGAGGGATAACCTGTGCGTTTGTACGATCATTTGTCAACCTGAATTCAAACCAAGTCCATGTTTGTttctgcatatttttttttttgttttttacttttagagtttcttcttctgttgtATATTACATAGACTGAAAAACTACTAAAGTATAAGGTGGAAAGGCTTTTTTAGAGCTTCAAAACACCAAAGAGataaaagaaaggaagaaagtcAATACTTAGTTGCAATAATTCATTGTTTTCTACAGCTATATATTGAATTGTACTTATTAACCATTCATAGGAATAAAGTTTACACTCTGACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638357.1 lncRNA downstream 11501 17688970 ~ 17707496 (-) True LOC120554284
TU319802 lncRNA downstream 174561 17512617 ~ 17544436 (-) True G235635
TU319728 lncRNA downstream 305117 17411986 ~ 17413880 (-) True G235571
TU319689 lncRNA downstream 353562 17365200 ~ 17365435 (-) True G235542
TU319657 lncRNA downstream 388820 17266260 ~ 17330177 (-) True G235512
TU319867 lncRNA upstream 118129 17851068 ~ 17851341 (-) True G235688
TU319870 lncRNA upstream 121245 17854184 ~ 17855048 (-) True G235691
TU319874 lncRNA upstream 125127 17858066 ~ 17858278 (-) True G235695
TU319895 lncRNA upstream 149464 17882403 ~ 17882848 (-) True G235715
TU319897 lncRNA upstream 156334 17889273 ~ 17889490 (-) True G235717
XM_039792929.1 mRNA downstream 30485 17604922 ~ 17688512 (-) True ahr2
XM_039792935.1 mRNA downstream 121847 17548583 ~ 17597150 (-) False LOC120554202
XM_039793056.1 mRNA upstream 1819 17734758 ~ 17745257 (-) False s100b
XM_039793057.1 mRNA upstream 1819 17734758 ~ 17745097 (-) True s100b
XM_039792549.1 mRNA upstream 129379 17862318 ~ 17877888 (-) True LOC120554000
XM_039793040.1 mRNA upstream 233785 17966724 ~ 17967809 (-) True LOC120554256
XM_039793055.1 mRNA upstream 235027 17967966 ~ 17969403 (-) True LOC120554266
TU319472 other downstream 615480 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 810579 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 811175 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 811512 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1687 other downstream 845883 16873041 ~ 16873114 (-) True trnat-agu_61
TU319844 other upstream 1792 17734731 ~ 17745200 (-) False s100b
TU320378 other upstream 1998380 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2634402 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2993464 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2993591 20726530 ~ 20728427 (-) False G236340

Expression Profile