RNA id: XM_039793051.1


Basic Information

Item Value
RNA id XM_039793051.1
length 751
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC120554263
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16736186 ~ 16742288 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttatagatgtaTTCAATAGTTGTTTTTACTGAAAAGAATGAGACCGAGGTTATACCAAGTGACTGGCTGAGCATCGACaaaaaagtttccttttggccCCCATATAACGGTACAAGATGTAGAAAAgcagttgaaaaaaatgaaactcCTGATGAAGAATGGGACGAATATGAAACTGAATGGGTGGCTGAGTATGGTTCCTATGAAAAAGCCAGAAGAAAGCTGGTGAAGTTCTGTGAAGGCAACAGTTTGGAGTCTACAGATGAGGACAGTGTACGGAAAAGAGTACCATCGGCAAAATATGTAAATGGATTTACATCTGGTACAGCCTCAGGAAGACCTCCAGTGCAGGCCTCAACAAGCCGGCTCCACACAGAGACAATGGAAAGACCAAAAAAGAAATTCTGCAGTAATGGAGCCAAAAGCCTGACCTTGCCAACCATACCTCTATTTGCACCATCAGCACCTGCTGTGACAGTCCCTGAACCAAGACAAGATGATGCAGCCAAAAAACAAGGCACAAAAGTGGTGGAAGCCGAggaaaaaattaaaacctgGCTGAAGTACAGTGGAGACCGAaatggaggaagaaaaaaaagagcaacagAAAAAGAAAAGCAGATGCCTCCCCCTCATGCAGATTCCAGCAGCTGCGAAAGTGAATgaAAAGATGCTGCtacttctcctcctctgctccgTCTTCATCATAAGAGCCACACACAATCTAATTTGCTTCAAATCTGCAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319479 lncRNA downstream 24994 16681727 ~ 16711192 (-) True G235357
TU319516 lncRNA downstream 122475 16611983 ~ 16613711 (-) True G235387
XR_005638345.1 lncRNA downstream 169095 16562804 ~ 16567091 (-) False LOC120554273
XR_005638344.1 lncRNA downstream 169170 16562804 ~ 16567016 (-) True LOC120554273
TU319509 lncRNA downstream 169171 16562814 ~ 16567015 (-) False LOC120554273
TU319545 lncRNA upstream 24378 16766666 ~ 16775545 (-) True G235413
TU319560 lncRNA upstream 131547 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 133721 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 171310 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 433334 17175622 ~ 17175960 (-) True G235471
XM_039792942.1 mRNA downstream 97991 16616703 ~ 16638195 (-) True LOC120554206
XM_039792978.1 mRNA downstream 179731 16531962 ~ 16556455 (-) False LOC120554223
XM_039792976.1 mRNA downstream 179731 16531962 ~ 16556455 (-) False LOC120554223
XM_039792975.1 mRNA downstream 179731 16531962 ~ 16556455 (-) True LOC120554223
XM_039792957.1 mRNA downstream 303754 16410760 ~ 16432432 (-) False LOC120554212
XM_039792952.1 mRNA upstream 82369 16824657 ~ 16854133 (-) True LOC120554212
XM_039792547.1 mRNA upstream 143021 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 273916 17016204 ~ 17026731 (-) True LOC120554233
XM_039792990.1 mRNA upstream 401683 17143971 ~ 17160195 (-) True LOC120554231
XM_039792941.1 mRNA upstream 443099 17185387 ~ 17208313 (-) True LOC120554205
unassigned_transcript_1673 other downstream 7679 16728434 ~ 16728507 (-) True trnat-agu_55
TU319517 other downstream 119870 16611983 ~ 16616316 (-) False G235387
unassigned_transcript_1647 other downstream 231256 16504858 ~ 16504930 (-) True trnat-cgu_16
unassigned_transcript_1645 other downstream 235656 16500458 ~ 16500530 (-) True trnam-cau_66
unassigned_transcript_1644 other downstream 279725 16456388 ~ 16456461 (-) True trnat-agu_41
unassigned_transcript_1675 other upstream 13705 16755993 ~ 16756065 (-) True trnat-cgu_19
unassigned_transcript_1684 other upstream 121589 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1685 other upstream 122145 16864433 ~ 16864506 (-) True trnat-agu_60
unassigned_transcript_1686 other upstream 129568 16871856 ~ 16871928 (-) True trnat-cgu_22
unassigned_transcript_1687 other upstream 130753 16873041 ~ 16873114 (-) True trnat-agu_61

Expression Profile