RNA id: XM_039793117.1


Basic Information

Item Value
RNA id XM_039793117.1
length 7244
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120554302
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14545740 ~ 14569910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcagtgcattgtgggacGTGGGTTGATGGTGAAGTCAAGATGGCTGTGAACCTCAAGCAGAGGAAGGAGCCTGCTGTAGAAAGGCCGTGAATGAAGTTTTGAATAACAAATTCTTCGTCGCTGCCTGTTTAGACTTAAACCGTCGTGCTGTTGAAGTTGTAGTCAACCTGTGGAGGACTTGATACATTCACAGACAGCAACAAAATCTCAAACAACTGAGGATAAAGTCTCGTATGAATTCCGACGAGAAGGAGGACTGTGAGTGTGCGCCACCACAGGCCGAGACTAGCCCCACAGGAGGACCATATAGAGAATACGAGGAGCCTGAAATAGAAAACCCAGAAGCAAGCCGAATGAAGCGAGCAGCTGCCAAACATCTAATAGAGCGCTATTACCACCAGTTAACTGAGGGCTGTGGGAATGAGTCGTGCTCCAACTCCTGGTGTGCCTCATCAGTCGGCTTCAACCGCATGGATAACAACGCAGCGGCGGTCAAAGCCTTGGAGCTCTACAAGGTCAACGCTAAGCTATGTGACCCCCACCCCTCAAAGAAAGGCACTGCCTCAAACTACCTAGAGAGCAGTGCTCACAGCAACTCAGACTGCGGCAACAGGAAGTTGAACCATAAAGATGTCCACTCTGTACGGGACAATTTCAAAGATGTAAATTACCTGACAGAGGAGAAAGTGTATGAGATCTTGGACATCTGTGGAGAGAAAGAAGATTACTCGCCTCTGATCAGGGTAATAGGTAGGGTGTTCTCCAGTGCTGAGGGCCTGGTGCAGAGCTTCCGGAGGTCCAAATCTCACACTAAGGAGGAGCTCAAGTCCCTCCAAGGTAAGGATGAGGACAAGGATGAGGATGAGAAGGAGGCTGCTGCCTGTTCCGCTACAGCTATGGAGGAGGACTCCcctgcctcctcttcatcatcaagGCTCGGAGAGGGCTCCTCAGGGGAAAATGATGTCCAAAAGCTGTCCCCTGATGAGGTGTCGGTGGACATTGAAGCAGTGCGGCGGGTCTACGAGCGCCTGCTCTCCAATGAGAAGATAGAAGCCGCCTTCCTGAATGCGCTGGTCTACCTCTCACCCAACGTAGAGTGTGATCTGACATACCACAATGTGTACTCACGAGACCCAAACTACCTGAACCTGTTTGTTATAGTGATGGAAAACAGCAACCTCCACAGCCCAGAGTACCTGGAGATCGCCCTCCCGCAGTTCTGCAAGGCCATGAGCAAACTCCCACTGGCAGCTCAGGCCAAGTTGGCAAGCTTGTGGTCACACTACAGCGCAGGGCAGATTCGGCGCATGGTAGAGACCTTCCAGCAGCTCATTACCTACAAGGTGATCAGTAACGAGTTCAACAGCCGCAACCTGGTCAACGATGATGACGCAGTAGTGGCGGCCACCAAGTGCTTGAAGATCGTCTACTATGCAAACGTGCTGGGCGGCGACCTAGATGTAGAGCACAACGAGGATGAGGACGAGGAGCCCATCCCAGAGTCTAGTGAACTTACCCTGCAGGAGTTGCTGGGCGAGGAACGGCGGAACAAGAAGGGCCCTCGGGTGGACCCGGTGGAGACGGAGTTAGGGATCCGCACAAACGATTGCAGACGGCCACTCATTGTCTTTGAGGAGTTTGTCAATGAGCCTCTAAACGAGGTGCTGGAGATGGACAAGGACTACACTTTCTTTAaggttgaaactgaaaacaagTTCTCCTTTATGACCTGCCCCTTCATCCTGAATCCCGTCACCAAGAACCTGGGCCTTTACTACGACAACCGCATCCGCATGTACAGTGAGCGGCGTATAACTGTGCTCTACAGTTTGGTGCAAGGTCAGCAGCTCAATCCCTACCTGAGGCTCAAAGTGCGGCGAGACCACATCATTGACGACGCTCTGGTCAGGCTTGAAATGATAGCAATGGAGAATCCTGCAGACTTGAAGAAGCAGCTGTATGTGGAGTTTGAAGGAGAGCAAGGTGTTGATGAAGGAGGCGTTTCCAAAGAGTTCTTCCAGCTGGTGGTGGAGGAGATCTTTAATCCAGATATTGGCATGTTCACATACGACGAGCGCACCAAACTGTTTTGGTTCAACTCGTCATCACTCGAAAATGAGGGCCAGTACACTCTGATTGGCATCGTTCTTGGTCTGGCCATCTATAACAACTGTATTCTGGATGTCCACTTTCCTATGGTGGTCTACAGGAAGCTGATGGGCAAGAAAGGAACTTTCAGGGACTTGGCTGATGCCAACCCGGTTCTATACCAGAGTCTGAAGGAGCTGCTGGAGTATGAGGGCAGCGTGGAGGAGGACATGATGATCACTTTCCAGATTTCCCAGACAGACCTGTTTGGGAACCCACTCATGTATGATTTAAGGGAAAATGGGGACAAGATTCCAGTcacaaatgaaaacagaaagGAGTTTGTGGCTCAGTATGCAGAATACATGCTGAACAAAAGTGTGGAGAAGCAGTTCAAAGCTTTCAGGAGAGGCTTCCACATGGTCACCAACGAGTCTCCACTCAAATACCTGTTCAGACCAGAGGAAATCGAGCTCCTGATCTGTGGAAGCAGGAACCTGGACTTCCTAGCACTTGAAGAAACAACAGAGTATGATGGAGGTTACAACAGAGATTCTCGAATCATCAAGGAGTTTTGGGAAACGTTGCATTCGTTTGGTGAGGAGCAGAAGCGTTTCTTCCTGCAGTTCACCACCGGCACTGACAGAGCACCTGTGGGTGGGCTGGGCAAGCTGAAGATGATCATTGCCAAGAATGGCCCTGACACTGACAGGTTACCGACGTCTCACACTTGCTTTaatgtgctgctgctgccagagTACAGTAGCAAGGAGAAGCTGAGGGAGAGACTGCTGAAAGCCATCACCTATGCCAAAGGGTTTGGCATGCTCTGAGCCCCTGCTCCAAACACACAGCAAAACGGACTCCTTCTCAGAAAGCCCATCAAACCCTGCTCTGCCCTTCCTTTatcaaaaggtgacaaaagacAGACCAGAGTATGTTTTGAGGAAAAGCAAGTCAATAATGAAAGAGGAGAAATGGTTCCAATAGAGCGCTCCAGTAGTTCTTCTACTGTGCCTGCATCATCCCACATCAGTCAGTGTAAGCACAGAGACCTCCTGATCAAAATACCCACCCCCACATCCACATTATGTGAATGTGCAGCagcctccctttttttttttttttttttttctttgtacagAGAGAATCATTtccttattatttattttaaggttAAAATGGGTTATTTTTCATGCCTGCCTGTTGTGATAGCTTCCTTACTTGGGAAAGGGGAAGGGTTATTATTAAACTGTAAATTTGGGACGATGCATTAACAAGTCAATATCAACcccattgaagaaaaaaaaaaaaatgtgttaaagTAGACCTGACCTTGTTCATAGACAATTGACAGAGATAATCTAGTTTTAGACTAGTCTTTACTACAAAATATTGTATTCCCAACAGAAGAAAGAGCTCTCGCTGACCATTCCACTCACAGCCATCGGCTATTGATTCTATCTAGTCCAAAATGGCACATTATGAAatagctgtttttattttttggccttttttcCTGGGGGGGGGGAACACACCGCAGGTTAGACTAAAATCTTGTCAGAGCTGTGTAAGTGCACTTAGACATTTtcagaatgtttgtttttttggctacAGGTTGCCATGATTGTTTGAAGCATTTTATTTCCATGTCTTCCTGTGTTGACAATtctaaataaaaacagtatttaTACATCAGTGCGGTTGGAACTACGATACCGTATTCTGCACGTTTTGGAGGATgtacacatgtagaccggtcaCTGATGATGTTCTCAGATCCAGGCATAGAACTCTTCTTGTGCCAACCTAGTCTCACACTGCAGAGTCTCTGTTCAATATAACTTCAATTTATCTGGAACTCCACATGTAGAGTCAAGAAAACAGTGTGTACTGGCAAAGCTTTGGTAGCTTGTGATCTTAAGTCCATTTGGCCTTAGTCTCAAGGTTGTGGTTACAACTGTCATTTTAATGCATCATGAATCTTCTGACAACACGACAAATGACCTGACAGGCCGACGTGTTTGTATTCACATTGCCATGCCAGATGGATGGCACTGTGATCGGACACTGGGCAAGTGAGGTCAGTAGTCTAAGCACAATCTGAACAAACTAATTGTTGTGTAAAGCTGCAATCCAGGGTCAGTCAATCCTGTAGCCACTGAGTCTCAGATAAGCCCCTGATATGTTCCTATCAGTCCTTCCTTTGCTGTTAGACCCACAATGGAAAATAATATCAGTGTAAGTGTATGGTTTGATCTGATCTCTCACTGATATATGCTTATGAGAGAtgggaaaacatttaaagaaaatattaaattttgTGAAATGTGCTTGTTCGGCATGTTATCCACCATTAAGTAGGGGATGAATTTAAATGTCATCTCGTTTGCATCCAGTTGAACGTATCTTAAAGATTGTAAGCAGGCAAAAAACAGTTAACCTAGTTCTGTAGAACAAAAATCCACATTCTATAGCTGTCACATTGTATCTTTTAGTATAACATTATGTAGCAAGGCTAGGCTAACTGTGATCCCCTGCTCCCAGTCTTTGTTCAAAGCTAGGATAAACATGTCCTGGACCTATGTACTGCTGTACTGAATGCACAGAGATGACATTGATATTCTCTGACTCTGGGGGAGACTGTACTGTGTGGACACATCACTGTGATCAGATTTACGTATATTTGGATTTGTCACATTCAATGAGAGTGAAAACAGCTGTAACCAcggtctttttttctgttcaacATTAATTGGAATATCAACTGTGAAATCATCCTCCCACAGATCAGGCCAATTGTTTGATAGTTCTGTTTTTGTCCAGTTGAATACCTGTAAAGAACTTGAGTAATGTCTGCATGGTGTTCTTGCACACAGACTATACTGACACTGTCGATAGAGTACATAAGGGAAAAGCATCGTCAGCCACCCGAACGGGTTTAAACGGTACAGTTTAACCAAATCAAACCacttatttgaaaataaaatggactCCCCTGAAATATAAATTTTAGCAGTTTGTTGCGTTTTGCTCACCCAGTAACTATGGTAAGTATGGTAGGTCACTGTGCATGTCCTTTTTAAAGGTGTTTATACATGTATACCCACATACATTACAGCCAATCCTTTTGCAAACCTTTGACATTTAAATTATTTCTACCATTCCGTGCATCCAGTAAAATATGAAGATCAATTAGAGTTTTGAGAAGAGTAAACATCGAGTCTGCAATACTTTTTGTTCAAGTTAATCATTCTAGGGCAGTGCAGTTTATCATTCACAAGCCAGACTTTAATTAAGACTGACAACACAGATTTCATGTTCATTTTGATAGAGTACACAACTCGTGCACATTTCAAGAGTCTGCTTATAGAGTTTCATATTGGGTGGAAATGAATGTAAGTAATGGAGTGAAAAATACATCCTAAAAACTCAAACTATAGCATACATTTGAACATGGGAATCAAAAATGTAAAGTATACACTAAAACATGACtaaaaattttataaaataaatgtacctttttgttttacttccAAATAAGTGGTTGAGATGATTTGGGAAAAATATGCCCTGCAGactgctgtaaagctgtcttaACAGTGTCCCCCCAGCTTTAGATTTGCTATTAAATCGTATAGCATTTATATTAAAGTCCACTTACTAACCTTTCAACCACATCTCATAGTCCTCATCAGTAAATGAAGCTGGCTCAGGTGGACATCACTTGACCTACATATGGATCTTCAATTACGGGATACCAAGTTGTCTTACATGGGAGGGAGATGGTAACCCCTGTCTCTGTTCCAAGATGGTTTTTGGTGTAGAATGTGAATGTCCTCCATGATCTTTATCTAACTATTTCGGTTTTAATGTCAAGGACCTTTAAGAGACTGAATGAACACCAGAAACGGGCAACATCAACTGTCTGCGAACAGACCAAAACCATTCACAGCATCCACTGGGAAGAGGTCCAAGGTCTTGGACCAGGAGTCACTGGACAGCTGGAGAAAGACATTCACATCTGACACCACAGACCATATTTGAACAGAGACAGAGCTTACCATCTCTGCCCATATAAGACCACCTGTTATCATGCAACCAAAGTTATTTTCTCTGGTCACATCACTACACCTTAGCCAGCTTGATAACAACTGAGCAAACTACATCCATTGATGAAAACCAAgagatgtggttgaaagctcCTGGAAACTATTGATTGGAGagtaaagatttttttgttgagccagattattattatgtctttcatttaaaaaacagttttggTATATTCAAAGGACTACAACTTTGTTGCTGATGGTCATTGACAAGTTGTTCAGAGCAGAGTGGTGTTCTGTGTGTTGTCCTGGGCTATTCAGTAGTGGTTGTTGGTATGTATTGTCTTTGGAGATTGAATCTGTGACTTCTCACGCTGTCTAACTATGAGGTTCCTGCTGTGCTGGTGATGTGTCTTTAAAAGGAccgtcttctttttttctttttttttctttaaacacTGCACAATTTGTGAGCGCGATGGTGCCCACAACATACCACTAAACCACAGTGCTGAGACCACAGCAGTACACAACAACCCTGAGCCATTCCGTCTGTTCCATTGCTCTTACTTTCTCATTGGACCTGGGCAAAATGTTGTTGGAGAATACTTTTCATTGCTTGTTTTTAGCCTTTATTGAAGTTACTTTGGACAGTACATGGAGTCTCTGGAAATGTGGACAAACCGTGAACTGGGTTGGAAAGTCAcaacagtatactgtatgtttgtgcgATTAACGACTTAGCTGGCATTGTTATACTGCAGTAACCTCGATCATGTGAAACTGTGTATGTTAAAACAAAGGTTAAGGATTACTTACAACTGTTTTGAGCCCAGGTCTGGTTTTAGCTGTTTAACGTTACTTTGTACCTCCGTTTTGTAATGCTGAAGATGCTTACATGGACATGTGAAAGGGCTCTAAAGGCTTGTAAAGGTAAAAGGTGAAAGGTCAACCTGATTTTGGAAAGGGAAGCAGTTTTCATTCATTGGTTTGACTTAACAGTTCCATTCTAAAAGATACAAACTGATGAAAGGCAACAAGTATTCAGTGCTGTgaaaacatgctaaataaaGATGACAGCTTTTTTCCAACTTG

Function

GO: NA

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318784 lncRNA downstream 3420 14537841 ~ 14542320 (-) True G234802
TU318761 lncRNA downstream 61711 14477426 ~ 14484029 (-) True LOC120554079
XR_005638310.1 lncRNA downstream 61776 14477426 ~ 14483964 (-) False LOC120554079
XR_005638309.1 lncRNA downstream 61776 14477434 ~ 14483964 (-) False LOC120554079
TU318727 lncRNA downstream 189340 14356095 ~ 14356400 (-) True G234752
TU318814 lncRNA upstream 29226 14599136 ~ 14600022 (-) False G234828
TU318813 lncRNA upstream 29270 14599180 ~ 14600286 (-) True G234828
TU318887 lncRNA upstream 236722 14806632 ~ 14828409 (-) True G234896
TU318929 lncRNA upstream 517040 15086950 ~ 15087401 (-) True G234927
XR_005638353.1 lncRNA upstream 619848 15189758 ~ 15190653 (-) True LOC120554280
XM_039792675.1 mRNA downstream 99644 14434308 ~ 14446096 (-) False LOC120554074
XM_039792674.1 mRNA downstream 99644 14434308 ~ 14446096 (-) True LOC120554074
XM_039792673.1 mRNA downstream 125749 14400865 ~ 14419991 (-) False atg3
XM_039792672.1 mRNA downstream 125749 14400865 ~ 14419991 (-) True atg3
XM_039792669.1 mRNA downstream 153092 14356830 ~ 14392648 (-) False slc19a2
XM_039793536.1 mRNA upstream 31245 14601155 ~ 14614899 (-) False LOC120554575
XM_039793534.1 mRNA upstream 31245 14601155 ~ 14614899 (-) False LOC120554575
XM_039793535.1 mRNA upstream 31245 14601155 ~ 14614899 (-) False LOC120554575
XM_039793533.1 mRNA upstream 31245 14601155 ~ 14614899 (-) True LOC120554575
XM_039792594.1 mRNA upstream 308648 14878558 ~ 14924344 (-) True chrm4a
unassigned_transcript_1568 other downstream 1433512 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1489053 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1559852 12985817 ~ 12985888 (-) True trnae-uuc_66
TU318311 other downstream 1591615 12953090 ~ 12954125 (-) True G234405
TU318109 other downstream 2252597 12287920 ~ 12293143 (-) False G234253
TU318891 other upstream 277924 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 392451 14962361 ~ 14962433 (-) True trnar-ccg_4
XR_005638386.1 other upstream 399612 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1570 other upstream 1216411 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 1218417 15788327 ~ 15788399 (-) True trnak-cuu_17

Expression Profile