RNA id: XM_039793135.1


Basic Information

Item Value
RNA id XM_039793135.1
length 1444
RNA type mRNA
GC content 0.35
exon number 4
gene id LOC120554312
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12951421 ~ 12954215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcataaagtgacattttcatgtaatgggacctttaaaacctggTATTTATGAAGCttatgtaaagtgtctttgtgATGAAATATTACTGTTCTCTGTCTTGAGGTTTAACGCCGCTACATGCAGCAGTCTTGTCTCACAACGCTGTTGTTAAAGACATGAGGAGTCTGGACAAGATTTGTTCATTTATGGAAAAGGAGCTGGAGCAGAGGACACAGAAGTATGTTGAGTGTATTAAGACTATGCTGCTCATGGGTGCCTCCTGTGGGACAAAGGATCTAAAAAGTGGAAGGACATGTCTTCACATGGCTTCTGAGGAGGCAAATGTGGAGCTGTTGAACATTTTCCTTGACCAGCCATCTTCACTGTATGTTGTAAATGTTAAGACATTCAGTGGAAACACAGCCCTGCACATTGCCAGCGCTTTGCAAAATCATAAAACTCAAGTAGAAGCAGTGAAGCTGCTGATGAGAAAAGGCGCAGACCCGGGGAGCAGGAACTTTGAAAATGACCTGCCATCTCAAATGGCGCCTGAAGGACCCGTTGGTTTAAAGGTGCGGCAGATCCTGAAAGGGAAACATTTTCATGCTTAAGTGAAGCTCAAAATCACTGTCAGTCAGACAGTCCAATCTATCATATTTATTTGCCAAACAAGGCAGATATTAGTTGTTTCAGTGAAACATGCCAAATGGTTCATTACTATGTAATGCCCACAGAGAAATAAAgatatgttttctattttttagtTTATTAACCTTTATTGCTTTAGGCATGAAGCCAATACTTTTAAGAGTGCCATACAATGAGCAAGCGTGCTCTTTAAAtctgtatgtgttgtgttttggaTAATGATTTGGGATAATTGATGACAAGTTGTTCCATAATTATGGAGGATTTAATCATGGGTTTTCTTTATTAGAATGTAAGAATATTATGCTTCATATCATTGTATTTGGAAATGCATGAACAGTTAACATGTAGATCTTTTTCTTTAAAGCATTCTATTTTGGTGTCTATAAATAGAGTcaggtgtttgtatacaaatgTATATGCATTTTTTCAAAGGCTTAATATTGTAGTTTGTGTAGAAAATGTACACATAGACCACACTACTGTAAATTTTATTGCGTGATGTTTTATCATGAATTTTCAACCTGAAATAGTCAGAGGATATTTTAATAGTCcatattttgtgtgcattttgaaaatgtgtagTTCATTTAATTTAGAAATTTTATGCAACATGTCATATTTTGAAGTAATCTACATCAAGTTAAATTAATGTAGATAGATTACATgaaacatttaacatatattgtGATGacacttgtttttctttaacaatGTATACTTTCCTAcatgtgtaaatgtttgttttaatctGAATGGTCACAATACAATAACAATGTCCCTGCTGGAGATCAATAAAGGTTTATCTCAcctta

Function

GO: NA

KEGG:

id description
ko04657 IL-17 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318280 lncRNA downstream 165478 12783991 ~ 12785943 (-) True G234375
TU318278 lncRNA downstream 171261 12779586 ~ 12780160 (-) True G234373
TU318234 lncRNA downstream 462413 12487905 ~ 12489008 (-) True G234333
TU318227 lncRNA downstream 464091 12436996 ~ 12487330 (-) True G234330
TU318222 lncRNA downstream 516678 12432847 ~ 12434743 (-) True G234328
TU318363 lncRNA upstream 34158 12988373 ~ 12991438 (-) True G234434
TU318408 lncRNA upstream 207517 13161732 ~ 13162096 (-) True G234478
TU318420 lncRNA upstream 245763 13199978 ~ 13200294 (-) True G234490
TU318421 lncRNA upstream 248707 13202922 ~ 13205960 (-) True G234491
TU318463 lncRNA upstream 476766 13430981 ~ 13439811 (-) True G234523
XM_039793523.1 mRNA downstream 66323 12797844 ~ 12885098 (-) True filip1l
XM_039793525.1 mRNA downstream 66326 12804845 ~ 12885095 (-) False filip1l
XM_039793524.1 mRNA downstream 97841 12797844 ~ 12853580 (-) False filip1l
XM_039793526.1 mRNA downstream 137659 12797850 ~ 12813762 (-) False filip1l
XM_039792660.1 mRNA downstream 307064 12602244 ~ 12644357 (-) False LOC120554061
XM_039793136.1 mRNA upstream 7660 12961875 ~ 12984575 (-) True gk
XM_039793137.1 mRNA upstream 7660 12961875 ~ 12984574 (-) False gk
XM_039792859.1 mRNA upstream 38623 12992838 ~ 12995995 (-) True mtrf1
XM_039792867.1 mRNA upstream 66833 13021048 ~ 13048596 (-) True zgc:65895
XM_039792868.1 mRNA upstream 66833 13021048 ~ 13029985 (-) False zgc:65895
TU318109 other downstream 658278 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 1509495 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1904462 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1982311 10967423 ~ 10969110 (-) True G233954
TU317708 other downstream 2000792 10949523 ~ 10950629 (-) False G233954
unassigned_transcript_1566 other upstream 31602 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 102401 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 157943 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 1893619 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1569 other upstream 2008146 14962361 ~ 14962433 (-) True trnar-ccg_4

Expression Profile