RNA id: XM_039793139.1


Basic Information

Item Value
RNA id XM_039793139.1
length 2098
RNA type mRNA
GC content 0.55
exon number 11
gene id sts
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19712684 ~ 19732543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCTTACGTTGGTTGATGACACGGACGGCAATAAAACCGGAAGCTTCGATTGACATAACCAACTCAAACTTGACGTATCACGGGATTTGCAACTCGCTGTTCCGGAAAGTTGGAATAGTTGGCGATGTGGAGCGAAGagtctctctgtctctgacaaTATGAAGTCTGcgtggctgctgctgctcctggaCCTCAGCTGCGTGTCTCTTCAGGAGAGCAGGAGGCCTAACTTTGTCCTGATGATGGTGGACGACCTGGGGATCGGAGACCTGGGTTGCTATGGCAACACAACACTGAGGACCCCCAACATTGACCAGTTGGCGCAGGAGGGGGTGAAGCTGACGCACCACATCGCTGCAGCCAGCCTCTGCTCTCCCAGCAGGGCGGCGTTTCTCACCGGACGATACCCGATACGATCAGGTATAGCGGGTGATGGCAGAAACTGTGTCTTTACATTCATCGCTGCGTCTGGAGGACTCCCCAGCCAGGAGGTGACCTTTGCTAAGATTGCCAAACAGCAGGGCTACGAGACAGCTCTCATCGGAAAATGGCACCTGGGACTGAACTGTGAGAGCAGCGAGGATCACTGCCACCACCCCAGCGTCCACGGCTTCAGCTACTTCTTTGGGATCCCGCTGACCAACCTGCGGGACTGCCAGGCGGGACACGGCACCGTCTTCATGATCTATAAGTATTTACCGTACAGGACGCTGGGCATCGTCTGCCTCACTGCGGCTGTACTCCACTACGGCGGCGTTTTCGCCCTCCGCCGATGGCTGCTTCTGAGCCTGCTGACCCTGGCGGCTGCAGCCGCAGGTCTGATAGCGGCGCTCATCGTGATCATGCCGTACATCAACTGTGTTCTCATGAGGGACCACAGAGTTGTGGAGCAGCCGTTTACGTCTGAAAACCTGACGCAGAGGATGACTCAGGAGGCCGTGGACTTCATAGAGAAGAACTCGGCGAGGCCTTTCCTGCTGTTCTTCTCTTTCCTCCAGGTGCACACGGCCATGTTTGCTTCAGCGGCGTTCAGAGGAACGAGCCGCCACGGTATCTACGGAGACGCCGTCCACGAGGTGGACTGGAGTGTAGGTGAGATCGTGCAGACTCTGGACAGACTCCGACTGAGTGAAAACACTCTGGTTTACCTGACGTCAGACCAGGGCGCTCATCTGGAGGAGATCTCGGCCAAAGGAGAAGTCCACAGAGGATGGAATGGAATATATAAAGCAGGGAAGTCCACAAATTTTGAGGGCGGGATCCGGGTCCCGGGAATCCTGCGCTGGCCGGGGAACATCCCCAGCGGCAGACAGATAGACGAGCCCACCAGCAACATGGACCTGTTTCCAACGGTGGTGCAGCTGAGCGGAGCGACAGTCCCACAGGACAGGCAGATAGACGGTCAGGACCTCATGGATCTGCTTCAGGGGACAGTTGATCGTTCCAACCACGAGTTTCTCTTCCATTACTGCAACGCCTACTTGAACGCAGTCAGATGGCATCCCAAAAACAGCAGCTCGGTGTGGAAAGCCTTTTTCTTCACCCCAAACTTCTACCCAGAGAACGAGACGGCGTGTTTCCACACGCACGTCTGCTTCTGCACGCCGGGCTACGTGACGTACCACGACCCTCCGCTGCTCTTCGACGTGTTCAGGGACCCGTCGGAGACGACGCCACTGACTCCCGACACTGAGCCGGCCTTCCACGCCGTCCTGGCTACAATGGAGGCGGCAGCCGAGACACATCGCAAGTCGGTGGAGCCGGTGGAGAGCCAGATATCGCCGGGGAATGTGATGTGGAAGCCCTGGCTGCAGCCGTGCTGCTCCACACTCACACAGCTCTGTCAGTGCCCGCAGGATGCTTAACTCTCTTCACACTCATTCCTAACAGGAAACTCCAGGAGACTTTCACTTAGAACTAATCTTCTCATATTTCTATAAAAAAATCCTAATATGTTGGTCTATGTCTGTTGAGCCAAAGTGGGCCTTCAAGGTATTAATAAAGTCTTACATTTAATATTCTAAAGAGGTCTTGAAAGTCTTAAATGATGTCTTTTCCTTTGGTAGGATTAAATAAAGGTGTTGTGTGGGACTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320318 lncRNA upstream 14066 19695053 ~ 19698895 (+) False anos1a
TU320309 lncRNA upstream 55691 19657041 ~ 19657270 (+) True G236060
TU320306 lncRNA upstream 57855 19654827 ~ 19655106 (+) True G236057
TU320295 lncRNA upstream 81505 19630758 ~ 19631456 (+) True G236046
TU320294 lncRNA upstream 82568 19629440 ~ 19630393 (+) True G236045
XR_005638365.1 lncRNA downstream 23462 19756005 ~ 19784765 (+) True LOC120554317
TU320418 lncRNA downstream 129560 19862103 ~ 19862319 (+) True G236148
TU320423 lncRNA downstream 253136 19985679 ~ 19986696 (+) False nlgn4xa
TU320446 lncRNA downstream 316922 20049465 ~ 20049864 (+) True G236176
TU320449 lncRNA downstream 337563 20070106 ~ 20070640 (+) True G236179
XM_039793651.1 mRNA upstream 14068 19671872 ~ 19698893 (+) True anos1a
XM_039793652.1 mRNA upstream 14068 19671872 ~ 19698893 (+) False anos1a
XM_039793805.1 mRNA upstream 105961 19602721 ~ 19607000 (+) True si:ch211-246m6.4
XM_039792552.1 mRNA upstream 113292 19585535 ~ 19599669 (+) True LOC120554004
XM_039792649.1 mRNA upstream 190292 19512902 ~ 19522669 (+) True LOC120554051
XM_039793532.1 mRNA downstream 84222 19816765 ~ 19818483 (+) True LOC120554574
XM_039792554.1 mRNA downstream 87323 19819866 ~ 19832208 (+) True LOC120554006
XM_039793609.1 mRNA downstream 107062 19839605 ~ 19851954 (+) True LOC120554605
XM_039793626.1 mRNA downstream 164549 19897092 ~ 19986729 (+) True nlgn4xa
XM_039793627.1 mRNA downstream 164553 19897096 ~ 19986729 (+) False nlgn4xa
TU319969 other upstream 1531149 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 1541007 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 1752399 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 2607748 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 2608320 17104568 ~ 17104641 (+) True trnat-agu_66
TU320432 other downstream 264256 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 475786 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 650843 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 755124 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 1083193 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile