RNA id: XM_039793147.1


Basic Information

Item Value
RNA id XM_039793147.1
length 2053
RNA type mRNA
GC content 0.49
exon number 12
gene id bzw1a
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19608622 ~ 19621651 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCATGCGCAGAGGGCGGAGCCTGCGGAAGTCCTGACGGAAAGGTCTTTTTGTTTGGGCCGCTGAGAGAGCGTCGACACTTTGGCTTGATTCCCCTGGTTAATAACCGTTTTTTATCTGCATAACATTCGGGTGTCTTTTATGAGTAATCAAAAGCAGCAAAAGCCGACGCTAACTGGCCAGCGGTTCAAAACGAGGAAAAGAGaTGAAAAGGAGAGATTTGACCCTACTCAGTTTCAAGAAAGTATCGTACAAGGCTTGAATCAAACTGGCTCTGATTTGGAAGCGGTCGCGAAATTCCTTGATGCCTCTGGCGCCAAGCTTGACTACCGTCGCTATGCAGAGACTCTCTTTGACATCCTGGTGGCTGGCGGGATGCTGGCCCCGGGCGGGACTCTATCCGATGACTTGACCCGCACGGAGTTCTGCCTCTTCACGGCACAAGAAGACCTGGAAACAATGCAAGCATACGCTCAGGTTTTTAACAAGCTGATCAGGCGTTACAAGTACCTGGAGAAGGGTTTCGAAGAGGAGATCAAGAAGTTGCTGCTGTTTCTTAAAGGGTTCACTGAGTCTGAGCGCAACAAACTGGCCATGCTGACGGGCATCCTGCTGGCCAACGGCAACATATCAGCCTCCATCCTTAACAGCCTCTACAACGAGAACCTCGTCAAAGAGgGAGTATCTGCAGCCTTCGCTGTCAAGCTGTTCAAGTCATGGATCAATGAAAAGGACATCAACTCTGTTGCTGGCAGTCTACGCAAAGTCGGCATGGACAACAGGCTTATGGAACTCTTTCCTGCCAACAAACGGAGCTGCGAGCATTTTTCTAAGTACTTCACCGACGCTGGGCTCAAGGAGTTGTCCGACTTCGCCCGCAACCAGCAATCCATCGGCGCGCGCAAGGAGCTGCAGAAGGAGCTGCAGGAGCAGATGGCCCGTGGCGACCCTCAGAAGGAGATTATCGCCTTCACCAAAGAGGAGATGAAGAAGTCCAACCTGTCGGAGCAGGCCATGATCAACATCATCTGGACCAGCGTGATGAGCTGCGTGGAGTGGAACAAGAAGGAAGAGCTGGTGACCGAACAAGCCATCAAACACTTGAAGCAATACAGCCTCCTGCTGAAAGCCTTCACCTCCCAGGGTCTGTCCGAGCTCAGCCTGCTGCTAAAGATCCAGGAGTACTGCTACGACAACATCCACTTCATGAAGGCCTTCCAGAAGATCGTGGTGCTCCTCTACAAAGCGGATGTTCTGAGTGAAGAGGCCATACTGAAGTGGTACACAGACGCCCACGTTGCCAAGGGGAAGAGCGTCTTCCTTGAGCAGATGAAAAAATTCGTGGAGTGGCTGAAGAATGCCGAGGaagAGTCGGAGTCGGAGGAAGAAGAGACCGACTAAAACCTCCCCCGCCAGATGAGCTCTTTTTCtgcccttttctttctttctttcttttttttttatatataagtagcagcaggagcagtagaatgttttctttttcttcctcttttcacCTCCTGTTACTTCttcaccctcccccccccccacggagacacgcacgcactctcaaacatttaaacaaaatttaaaaaagtaaggTGTTTGTGTCGCGGCTCACAGTGGAAGCAGAAAACAATGAATACTCCCCCTCCCTTTTTTGTTATTGGGGGAAGTATTCTTACTGTTCTGTAATTTGGTTAGAAAACATTCCAGTGATCTCGTCGGCCGCTGCtcgaaccaatcacaaacaaagTTTGCGTTTTTGAGACTATGAAGCTGACGAAAATGCCGTTTTTGCCAACGTTTCTCTTCTcccctttttgactttttttattttgccccCAGCTCATGTTTCTGGCTTCCTGTCTGGTCCTAAACTCTGCCTCCTTTTTCTTGACTTCTGGGTAAACCCTTTACCATGTTTCTAGATCAGTCTGTCAGAAGACATGCCCCCCCCCGTCAGATGCCTGATTATTATTGGTTTCTACTTTCTTTAATCTGATATCAACCgattgacttttttatgaaaataaaagattattcAAATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320255 lncRNA downstream 269 19607629 ~ 19608353 (-) True G236015
TU320260 lncRNA downstream 1106 19566191 ~ 19607516 (-) True G236020
TU320272 lncRNA downstream 21899 19584193 ~ 19586723 (-) True G236032
XR_005638391.1 lncRNA downstream 29247 19577088 ~ 19579375 (-) True LOC120554383
TU320258 lncRNA downstream 43186 19565117 ~ 19565436 (-) True G236018
TU320302 lncRNA upstream 11727 19633378 ~ 19633959 (-) True G236053
TU320303 lncRNA upstream 12453 19634104 ~ 19634355 (-) True G236054
TU320304 lncRNA upstream 13079 19634730 ~ 19635006 (-) True G236055
TU320355 lncRNA upstream 42259 19663910 ~ 19667992 (-) True G236094
TU320356 lncRNA upstream 42259 19663910 ~ 19667992 (-) False G236094
XM_039793267.1 mRNA downstream 27364 19551436 ~ 19581258 (-) False kynu
XM_039793266.1 mRNA downstream 46549 19551436 ~ 19562073 (-) False kynu
XM_039793265.1 mRNA downstream 46549 19551436 ~ 19562073 (-) True kynu
XM_039792647.1 mRNA downstream 79380 19523504 ~ 19529242 (-) True LOC120554050
XM_039793146.1 mRNA downstream 1085606 18465948 ~ 18523016 (-) False acvr2ab
XM_039792553.1 mRNA upstream 451 19622102 ~ 19654312 (-) True aox6
XM_039793144.1 mRNA upstream 127420 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA upstream 127420 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA upstream 127420 19749071 ~ 19755962 (-) True pnpla4
XM_039792919.1 mRNA upstream 753942 20375593 ~ 20380492 (-) False dhrsx
TU319844 other downstream 1863422 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 2505105 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 2700204 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 2700800 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 2701137 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 109668 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 745690 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 1104752 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 1104879 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 1139057 20760708 ~ 20760992 (-) True G236349

Expression Profile