RNA id: XM_039793186.1


Basic Information

Item Value
RNA id XM_039793186.1
length 3152
RNA type mRNA
GC content 0.45
exon number 8
gene id prkx
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20208329 ~ 20234852 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTAACCGGTGTCTACTCTCTTCCTGGTTGATGTGGACAGAAGAAGTGCTGGGGTGAGGTCTGTTGTTGTAGTTGTGTAAAAACATGGAGAAAATCAGGCTATTTGGGATAGAAAAGCCAAGTGATTCACCGAGTTAATCAGCGTGTAAACGCGTATTTTACTTCGCGCTAACAGACGGTTATTTGGGCCGCTTCCTCTTCAAACCGCCACTGTTTTGACGGAGCAGCTTCCCTTTTAGCTCACGGTAGCTGATAATGCTAATGCTACCTGCCAAACAGTGCTATTACTTTAGCCAGAGTGATCTCTATGGCTCTGACTTCAGCTATCTGTagctgctaatgctaatgctaccaGCCACAAGCCAGACAGTGCACCTGTCACCGGCTTCTTTGTGCATCTCCTGTCGGTGTCTTCGTGTCCTGTTGTCTGCTATGTGTCTCAACTTGTAAACAACTAACTTGGCTTCTAattcatctgtgtttttgtcgccttttttacATTGTAGTCGCTTTTTTCGAGATTTTTCTTGCTTTTCTCGACGTTTTTGACGCTCtttctagctagctaactgtttaGTTGcgttttttgctgtttttttcagcGTTGTTCTAACTTTTTAAGGTGTTCTTGtctaaatttctttgttttagtCGTTTATTCCAACGTTTTACTCCCGTTTTCTCTACGTCTTTGTAGCTTTTGACGTTTTTAGTCGCTTTTTTAACGTTTCTTCCGACTTCATTTTGTTACATTTATCTTATTTTCCTTCCACATTGACAATAATGTCGTAgtataacaacaacaaagattGAATGACAGCTCAACACAGCCCCACTCGTTTATAATGAGTCTAGTTTTACTCTCAACGTCAATATATTTAGGAACAATTCATCAAAATTAAAGTTTGAGAAGATGAACTGAGTCCCTGCATCCAGCAGACATGTAACTGTTATAAACGGTTGTGATATGAACGGTGTACAGCGCGCGCCACTGGAGACTTCCAAACACAAACAGTTTCTAGCTTAAATCCCGAGAAGAAAGAGATGGCGTCCTCCAAAGTAAAAGTGGGAGTCAGCGGGGAGAAAGAGAGTAAAAGCAGCGGTTCTGCCGGAGGCGAAGCAACAAATACCCGGATGTACTGTCTGGAGGACCTGGAGACCGTGGCCACAGTGGGCACTGGGACGTTTGGCCGAGTCTTCCTGGTTCGGGACAGGGAGAGCCGGGCCTTCTTCGCCCTGAAACAGATGAAGATCCCCGACGTGATCCGGCTGAAGCAGGAGCAGCACGTCCACAATGAGAAGGAGGTGCTGTCAGAGGTCAACCACCCTTTCCTTATCAGACTGTTCTGGACGCACCACGACGAGCGCTTTCTCTACATGCTGATGGACTACGTGGCGGGCGGCGAGCTCTTCAGCTTCCTGCGCAGTCGTGGGCGCTTCAGCAACGCCACGGGCCTCTTCTACACCGCTGAAATCGTCTGCGCCATCGAGTACCTCCACGCCAGAGAAATCGTCTACCGCGACCTGAAGCCGGAGAACATCCTGCTGGACAGCGAGGGACACATCCGCCTCACCGACTTTGGCTTCGCCAAGAAGCTCTCCGACAGgaCATGGACTCTATGTGGGACCCCCGAGTATTTGGCTCCTGAAGTCATCCAGAGTAAAGGCCACGGCCGAGCGGTGGACTGGTGGGCGCTGGGGATCCTCGTCTTTGAGATGCTGGCTGGgtACCCGCCTTTCTTTGACGACAATCCATTTGGTATCTATCAGAAGATTCTGGCGGGAAAACTGGAATTCCCTCGCCATCTGGACTTCTACGTCAAagacCTCATCAAGAAGTTTCTGGTTATCGACCGAGCCAGACGCCTCGGAAACATGAAGAACGGAGCAGACGATGTGAAGAAGCATCGCTGGTTCAAGACAGTTGACTGGGAGTCCGTTCCTCTGAGGAAACTGAAGCCTCCCATAGTTCCCAAAGTGTCCCATGACGGAGACACCTCCAACTTTGACGTTTACCCGGAGGACGACTGGAAGAAAGATCCTCCTGTGCCTCCCAAGGACTTGGAGATCTTCAAGAACTTCTGATCCCCGAGCCCGCTTTATTTATTACAGACACAGCTCGCTATCACGGAGAGAAAACCCAGGACAGATGCATCAGATCAACTCCAGGTGATCGGTGCTGTGGATCAAACCGCAGAGATAAtttgctttttatattttaatttatccAACTTAAAAGTCTttgctgttttctttctctctgaggCTGCACGTATGCAAACCAAAAGACTGTTACTTTCTacgtttaaaagaaaaaaagagagaagaatcaggtcttttttttatattatcatgttttatattttatctcTTTTTAAACAATGTTCAGACTGGTGCTgtgactgtcagctggccagTAGTCAttaataaactgtatgtaatTTACAAAAAGCTGAGCACTTACAGCACAGTTTGATGTCTCACAGTTACAGTTCAGttgaggctacatctacactactacattttggtttagaaacaaatatcttttgctacttTTACATCTCGCATCCACTCTACAATTTTCCAAACTCCATTCAGAAAAAGTCGTTTGCCTGTCGACTTGCGGACAAACTTCGGCATACTTTGATCCGTTTATTTCTTAGAGAAGGCATTAAAATTGAGAAATATCAGCTCCTAAAAAAAGAGCCCGTGGAAACACTGCGGTTTTGGTTTGAAACTGCATATATTTTGCTACTTTTACGCCTTGCATCCGCACTACTGCTGCGTTTCCGACAGACATTTGGAAACCTCTGCCTCCTGATTTGGTCTCATCCGTTAGTTTTTGTCTCAAAGAAAACGTAGCCGTGTAGATATAGCCTGAGTTTGCTTCCACGCCTCCGACTATTTAATCTCTGTTATTACTGCAACAGCGTTCACTTCTCATCATCGTCATTGTCATTGTTGTCATGTAAGAAAGGGGGTGAAAGGTGCTGGGAACATTTAAATTGTCGCTCTGTAGAGCTACGTCACTATTCACAGTATTCACTTTATCGTGCAGAAAGCTTCTTTTCGGGACAATAATTtgggcctttaaaaaaaaaaaaaaacatgtattttgttCGCTGCCATTAAAATCAAAGTGATCATGTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K19584 PRKX; protein kinase X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320469 lncRNA upstream 395 20207730 ~ 20207936 (+) True G236199
TU320466 lncRNA upstream 22451 20185653 ~ 20185880 (+) True G236196
TU320459 lncRNA upstream 113452 20094348 ~ 20094879 (+) True G236189
TU320457 lncRNA upstream 125050 20083028 ~ 20083281 (+) True G236187
TU320449 lncRNA upstream 137691 20070106 ~ 20070640 (+) True G236179
XR_005638292.1 lncRNA downstream 48304 20283156 ~ 20284898 (+) True LOC120554047
XR_005638293.1 lncRNA downstream 48304 20283156 ~ 20284898 (+) False LOC120554047
TU320530 lncRNA downstream 63524 20298376 ~ 20298640 (+) True G236258
TU320532 lncRNA downstream 99509 20334361 ~ 20334970 (+) True G236260
TU320543 lncRNA downstream 140743 20375595 ~ 20377740 (+) False LOC120554192
XM_039792602.1 mRNA upstream 173602 20029026 ~ 20034729 (+) True LOC120554034
XM_039793626.1 mRNA upstream 221602 19897092 ~ 19986729 (+) True nlgn4xa
XM_039793627.1 mRNA upstream 221602 19897096 ~ 19986729 (+) False nlgn4xa
XM_039793609.1 mRNA upstream 356377 19839605 ~ 19851954 (+) True LOC120554605
XM_039792554.1 mRNA upstream 376123 19819866 ~ 19832208 (+) True LOC120554006
XM_039793657.1 mRNA downstream 23491 20258343 ~ 20271296 (+) True mxra5a
XM_039793633.1 mRNA downstream 77672 20312524 ~ 20341903 (+) True fam207a
XM_039793632.1 mRNA downstream 88640 20323492 ~ 20325622 (+) True LOC120554617
XM_039792914.1 mRNA downstream 120450 20355302 ~ 20375600 (+) True LOC120554192
XM_039792915.1 mRNA downstream 120450 20355302 ~ 20373867 (+) False LOC120554192
TU320432 other upstream 210664 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2026519 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 2036377 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 2247769 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 3103118 17105141 ~ 17105213 (+) True trnat-cgu_30
TU320542 other downstream 148534 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 252815 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 580884 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 677803 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 1067474 21302326 ~ 21361235 (+) False G236467

Expression Profile