RNA id: XM_039793228.1


Basic Information

Item Value
RNA id XM_039793228.1
length 1433
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC120554361
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20794346 ~ 20802270 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACAGTAAAGatgtctccctctcctcccgttTGTCGCggtgtctctttgtctcctccgctgctgatgctgatgctgctgATCCACATGAAGCTGTACGTTGCCGTGTcgattttgtcgataaagtttttattttgactttGAAGGCAGAATCTGTTTCCTGTCCAGGATCGTCATCTTCTTCCTCCAATCTGCCGGCTGACAACATagagacagacagacagagagacagacagctccTCTGCTGCCGCAGAGCCTCTCGCGTCGGTGGGTCCGGTTGTCGCCATGGGAACggtgctctctctgtctccaggCTCGGGGAAAGCTCGAGCCCCAGAGCAGCgcgtgaaggaggaggagaagaagaagagaaagaggcaCCCGGTGCTGCTGCACGCGCTCAGATGGAAGCAGCGTCTGCTGGCGGCGCGGGCCAAGAGGAAGGGCGGGAAGAAGGTGAACCCAGACGAGTCCCAGCacgtgcacacgcacacgcagcGCCACACGGACAGCCGCCACCGAGCGCTGAAGGCCGGACACAGACCTGGACCTATCCCGGTGCCCGTCCCAACCGTCCCGGGGTttaaccagaaccagaaccaggggAGCCTCTCCCCACCCAGGGTGGTCGTAcagGCATCTACAGGCGAGCTCCTTCGTTGTCTCTCTGACTTCCTGTGTCGCCGTTGTGTCAAACTGAAGGAGCTGTCGTCCAATCAGATCGTCCTGTGGTTCAGAAACGTAGACAGAGCGCTGCTGGTCCAAGGCTGgcagGACCAGGTCTTCACCAGTCCTGCCAGTCTGGTCTTTGTGTACCTGCTGTGCCGGGCAGCAGTAGACGAGGACACGTCTTCGGAGCAGGAGCTGCACTCCGTCTTCCTCACCTGTCTCTACCTGAGCTACTCGTACCTGGGCAGCGAGATCTCCTACCCGCTCAAACCCTTCCTGCTGGAGGCCAGCCACAATGCATCCTGGGAGTCCAGCCACAATGCATCCTGGGAGTCCAGCCACAATGCATCCTGGGAGTCCAGCCACAATGCATCCTGGGAGTCCAGCCgcgatgcattctgggagagaGCGCTGCAGCTGATCGACCGGCTGAGTGCCGACATGCTGCGGATCAATGCTGAGCCGCACTTCTTCACAGAGGTGTTTCAGGATCTGAAAAAAGagggacgagagagagagaagcaagagaaagagaggatgaaagagagggaggagaaagagggggagagggagaaagatgaaatgaaagagaagcaggagagagagaaggaggaggagaaagagaacaaTGGAGGAAACAGCATCGATGATCTGGATCGttaagagagaagaaaagaggagacCACAGTATTTACactgctacgtttccccctctcattccccctgctctggtgttcccccctctcattccccctgctctggtgt

Function

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04724 Glutamatergic synapse
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320660 lncRNA downstream 25181 20768705 ~ 20769165 (-) True G236353
TU320657 lncRNA downstream 32235 20761902 ~ 20762111 (-) True G236350
XR_005638571.1 lncRNA downstream 39810 20753350 ~ 20754536 (-) True LOC120554725
TU320650 lncRNA downstream 41323 20752609 ~ 20753023 (-) False G236347
TU320652 lncRNA downstream 41323 20752609 ~ 20753023 (-) False G236347
XR_005638382.1 lncRNA upstream 19464 20821734 ~ 20824815 (-) True LOC120554364
XR_005638381.1 lncRNA upstream 22564 20824834 ~ 20838767 (-) True LOC120554363
TU321078 lncRNA upstream 28087 20830357 ~ 20830736 (-) True G236644
TU320980 lncRNA upstream 37342 20839612 ~ 20841745 (-) False G236560
TU320981 lncRNA upstream 37342 20839612 ~ 20841745 (-) True G236560
XM_039793653.1 mRNA downstream 338283 20442981 ~ 20456063 (-) True LOC120554635
XM_039792919.1 mRNA downstream 413854 20375593 ~ 20380492 (-) False dhrsx
XM_039792917.1 mRNA downstream 413854 20375593 ~ 20380492 (-) False dhrsx
XM_039792918.1 mRNA downstream 413854 20375593 ~ 20380492 (-) False dhrsx
XM_039792916.1 mRNA downstream 413855 20375593 ~ 20380491 (-) True dhrsx
XM_039792558.1 mRNA upstream 43031 20845301 ~ 20850464 (-) True rgn
XM_039793201.1 mRNA upstream 51295 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA upstream 52521 20854791 ~ 20867800 (-) False vps16
XM_039793665.1 mRNA upstream 90644 20892914 ~ 20920498 (-) True LOC120554644
XM_039793686.1 mRNA upstream 138718 20940988 ~ 20951865 (-) True arl11
TU320656 other downstream 33354 20760708 ~ 20760992 (-) True G236349
TU320640 other downstream 65919 20726403 ~ 20728427 (-) True G236340
TU320641 other downstream 65919 20726530 ~ 20728427 (-) False G236340
TU320553 other downstream 425913 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 1061809 19731319 ~ 19732537 (-) True G236111
TU321082 other upstream 41222 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 41222 20843492 ~ 20853383 (-) False rgn
TU321086 other upstream 41781 20844051 ~ 20853383 (-) False rgn
TU321079 other upstream 43091 20845361 ~ 20853383 (-) False rgn
TU321090 other upstream 60410 20862680 ~ 20863311 (-) True G236646

Expression Profile