RNA id: XM_039793253.1


Basic Information

Item Value
RNA id XM_039793253.1
length 4546
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC120554377
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14966316 ~ 15013814 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGGACGAAACAGTTCCTACCCGGACCGGCAATGAGACGCACACTTAAACATGGCGGCCAACATAGAGCAGATTTTCCAAGATTTTATATTGAATAAAATCAGGGAAATAGAAGACCAGAATGAAGACAAAACTGCTGCCGAAGGAGATAATGTTAATGGCATTGAAATGGTTGGAGCAGAAAAAGCCCCTTCGGAGATAGACAAACAGGACGACTTAAGGGGCAGTGGttcacaaaagaaacaaaagaagcacaaaaaacacaaaagcaagaagaagaggagaaaccGAGAAAAGGAGGAGGCGAAGAAGAGCAGTTCGGAGTCTGGGGCAGAATTGGAGGGAGGAACCAACCATCAGCCAAGAAGAAGAACGCCAACGGAGGTGAATAAGGAGCAAGGTGAGGATAACGAGAGCAAGTCCAGATGCCACAAGCggaaaggaaagaggaagaagaagaagaagaagaagagaaggaggaaagGTGACGAGAACTCATCAGATTCCGACTCAGAGTTCGTGTCAAAGCAGAGGGAGAGTAATTGTGGTGAAAGCTTATTGCCAAGGCGACGAGAGGAGCTTCCTGATATCATCCCAAAACAGGACAGCTCCATTAAAGGAAGAGGAGATGAGGAAAGACACGGCAGGAGAAGTTTCCGTTCCCGTTCACGGTCACATTCCTGTTCTCATTCACATTCAGTTAGGAGGAACTCTCGGTCTAGAGACCACCACCGGAGGTCTAGGACTCGCTCCCTATCCAGTACACAGCGCCACAGGACTCGGTCcagCTCTTCAGAGAAGAGGGGAGCTTTGGATGAACCCACACCGTCCACCCAATGTCCTTTAAAAGGCCTCCAGCCACCTGAGCTGGCCTCCAGTCCTACCCGAAGTAACATCAAAGCACAGGAGCTGGCAGAATCAAGCACAGAGCTGCAGAGTCCTGACCAGATGGAAAAGCCACCAGAGAACAAAGAAGATAAAGCAGACGACTCGACACAAAAACTAGGTTCTGCCGCACCCCACTCCATGATGAGCCAGTCCATAGCTACTGAACCTGACCAGACCACTGAGCTCAGCTTGCCTCGGATTAAAGCATCAAAACACCCGAGTACATCTGACACTAATGTTAAATTGCCAGCAATGATGAAGAGGAAACCATCCAAGTCCCCACAGAGGAAAAAAGAATCAAAGTCATCAAAGAGGCAGAAAAGATCTAAGTCACCATGTAGGAGCCACAGGAGGGGATCCAGATCCAGGAGTCCTTCAAAGAAGAAGAGGTCACGGTCGAGGTCAGGGGGCCGGCGGTCGCGGAGGTCGCGCTCACGGTCGGTGTCGAGGGGTCGGAGGAGGGCTACATACAGCCAGAGGGACCGCTGGAAACGAGAGCCAAGTCACTCCCCTGTACTCATCCTCCGCAAAAATAGATCCCCCACTCGGAAACTCTGCAGTTCGAGCAACAGCCCTCAACGCATCAGTGAACTGGATAAGGACCAGTTGTTAGAAATTGCCAAGGCCAATGCTGCTGCCATGTGTGCCAAAGCAGGAATGCCCATCCCTGCCAGCCTGAGGTCCACAGTGCTTCCCCTGTCTCTGCCCAGTATGGCCATGAATGCTGCTATGGCCAGTATGACGGCCGCCACCATGACAGCGGCGTTGTCCAACATGGGCATGTCGTCATTGCTCCCGTTGCCCTCCATTACCAACAAGCCCCCTCCTGTCTCAACGCAACCCAACACTGCTGCTTTGGAGGAAGTGAAGAGGAAAGTAGCGAAGCAGGCCAACAGCATCAGCATTAAGGAGTTTACTGATAAATGCAAGATGATTGTGGACAGTAAAGGAGAGCTGCCGGTGGCAATGCCTCATGTTTCAGACGAAGAGGATGATGGGAAGCCTTTTGGAGGATCAGCTCTTCGAGAGCAAAAAGCCATCAGCTTCAGCATCAACAACACCACAGTACGGCCAGCAGTGCGTAGCGACGCAGGCATGGCCAAGGAGTTTCCTGTGTCTTCCGGATCCCAACATCGTAAGAAGGAGGGCGAGGCACTGGGGGCCTACGGAGAATGGGTTCCAGTCGACAAAACATCAGACAAAGCTGCAGCTGCCTCCAGGAAAGCCGGGACCACTGTTCCCATAGCGACAGCTACCTCATCATCAGGTGAAACGAAGACAGCACCAGGGTTAACGGAGGTTGTCGAACAGCCTGTTTGTGTGCTAGATAATGACAGCGTTTTTCCTGACCCACTACTGCAGcCAGTAGATATTTCTCAGGCTGTAACTGAGAGAATCAAAGCTCAGAGGCGATTGGCTGAGAACCCCTATGATGTCAATGCTATCTGCATGCTTAGCCGGGCACAAGAGCAGGTGGATGCGTGGGCCCAATCCAATACTGTTCCTGGTCTTTTCACTGGTTCGACTGGAGCCCAGGTCCTCAGCTCGGAGGAGCTTTCTACCAGCGGACCACAAGCATGGCTGAAGAAGGACCAGTTCCTCAGGGCAGCTCCAGTATCAGGGGGTGTCGGGGAGTTCCTGATGAGAAAGATGGGCTGGAAGACCGGAGAGGGCCTAGGGAGGAACCGCGAGGGCACCGTGGAGCCAATCATAATTGACTTCAAGGTCGATCGCAAAGGACTAGTTGCTGAAGGAGAGAAGCCACAGAAGCAGACAGGAGGACTGGTGGTAACCAAGGATCTAATGGGGAAGCACCCGGTGTCTGCTCTCATTGAGCTGTGTAACAAGAGACGGATAATGCAGCCAGACTTTGTCATGGTGCATCACAGTGGTCCCGACCACCGAAAGAATTTCCTCTTCAAGGTCACAGTGAATGGCGTGGACTACCAACCCCAGACAGCTAGTCCCAATAAGAAACACGCCAAGGCCATGGCAGCTACCGTTGCACTGCAGGCTCTGGGAGAGGTTCCTGTTGATGGACCAGGACTCTACACTGGCCCTGTCTTCACTGCCGCGTCTACTGGCCCCCTGTTTTCTACATAGACACCCACACAATAGAGGGACTGACACATTCTCCATAGTTCAACTGTTGGACTATGTTCTGTCTTCAGTCGTGGGACATTGACAGAAAGGGATTTTTGAGTCCCGCTAAATAACCGGTCCATCATTTCCACTCTGGTCACTTATTTATACAGTATGCTAAGGACCGAACAAATACTCTAGGCACAGGACAGTGAGAACCATGAAGACCAGTCTTGGCTTCACATGACACCTGTGACTGAATTTATACCCTTCAaagttacattttcttttaaactaCGTTCCTGACAGAGTGGCAAATACTTTTTTTGCTGGGTTTTTAGAATTGCGAAAGAGTCTCCACCATATTAAAAGTGGAtggcatgtatgtatgtatatatgtatgtatgtatgatataGTAGCATTTCAGCCTGATATATATATTAGCTGACCAATACTTTAGTATAACCCTAGAACAGACACGAGTTTCATAGCAATGGATTTGTTGTTGGTCGCTGACATTGGAAAAAATGAACAATGTATCTGTAAATGCCTGTGTCCTGTTGGTTAACTTTTCTGTTGGTCCTGATATTACATTTGTGGCCTGGCctctttcttaaaaaaaaaaaaatgtttctcatACAAGAGGCTTTTAAATTTTATGGAACTAACCCTCTAAAAATGTGTAAACTGAATAAAGATTATATTTATGTTATGTAGTAGAGGAagccaaaatgtgtttttggcaaAAGAAATGCCTGTGTTTAATGTGATTTCAGCTTCTTATCAGTGTCACCGTTTATACGACTTAGCAGGGTTCTGACCTCCATTTCAGCCCTCCAGTACACACACGAGTTGTGTCCGCTGCTTCTTTTTCACTCGCCAGTGAAGAGATTCACTGGGCGTTGAAAATGCATTTGTGATTTTCAACCAGCAGGAGTCCATAATGCAATGACACCATCTCTCACCATCTTCCCATCTGTAAACACTGCCAGATGTTTTAGAGCTTCTCAGTATGAGCACTACGGCTGAGCGTTGAAGCTGGGGTATCTGCTGTGGTTGGCAAGTGCTGACACCCAGTCCACTGATTGTGTAAAGTCATAATTTACTCTTGTattctgatgaaaactgattCCCACACAAAATGTTTTACCCATAAAAAAATACTTCGATTGACCTTTTCTTTTTGTGAAGAAGTGTACTATCCCAAATGGATAAAACATGACTACTGACtataaaaaaatctgttttattcTGAGCATACTGTATGTAAGGCAGGTGTGGAGAATATTCCTAATctgtcaaactttttttttttgtatttctgacCAAGGTACGATCTCTACTGTTGCTCTTTTAAGTATAAGTGATACAGTTCTATATGTTTCTTATTGTTAACAAATCTAATGAATAGACCAAAGCCAACAAAAAACTGAGCCTGCTGAGAAGTATTATGTACGGAAGCCCTGAGAGGCAACTGAGAAAAGAAATTGTGATGATCCATTTTCCAAGTCTGATCTAAAttgttttctctcctgtttATGACATAAGCATAGGTGAATAAAAGGTTTTGCCAGAA

Function

GO: NA

KEGG:

id description
K23718 SON; protein SON

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318887 lncRNA downstream 137907 14806632 ~ 14828409 (-) True G234896
TU318813 lncRNA downstream 366030 14599180 ~ 14600286 (-) True G234828
TU318814 lncRNA downstream 366294 14599136 ~ 14600022 (-) False G234828
TU318784 lncRNA downstream 423996 14537841 ~ 14542320 (-) True G234802
XR_005638309.1 lncRNA downstream 482352 14477434 ~ 14483964 (-) False LOC120554079
TU318929 lncRNA upstream 73136 15086950 ~ 15087401 (-) True G234927
XR_005638353.1 lncRNA upstream 175944 15189758 ~ 15190653 (-) True LOC120554280
XR_005638341.1 lncRNA upstream 294694 15308508 ~ 15309289 (-) True LOC120554270
TU319059 lncRNA upstream 352594 15366408 ~ 15366892 (-) True G235029
TU319060 lncRNA upstream 354443 15368257 ~ 15369022 (-) True LOC120554282
XM_039793249.1 mRNA downstream 2345 14935720 ~ 14963971 (-) False gucy1b2
XM_039793248.1 mRNA downstream 2345 14935720 ~ 14963971 (-) True gucy1b2
XM_039793250.1 mRNA downstream 5856 14935720 ~ 14960460 (-) False gucy1b2
XM_039793252.1 mRNA downstream 6239 14935720 ~ 14960077 (-) False gucy1b2
XM_039793251.1 mRNA downstream 9070 14935720 ~ 14957246 (-) False gucy1b2
XM_039792540.1 mRNA upstream 78390 15092204 ~ 15098640 (-) True LOC120553991
XM_039793041.1 mRNA upstream 588501 15602315 ~ 15611660 (-) True LOC120554257
XM_039793032.1 mRNA upstream 609338 15623152 ~ 15633620 (-) False LOC120554251
XM_039793031.1 mRNA upstream 609338 15623152 ~ 15633620 (-) False LOC120554251
XM_039793030.1 mRNA upstream 609338 15623152 ~ 15627585 (-) True LOC120554251
unassigned_transcript_1569 other downstream 3883 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 116579 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 1854088 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 1909629 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1566 other downstream 1980428 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1570 other upstream 772507 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 774513 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 775834 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 776402 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 777503 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile