RNA id: XM_039793267.1


Basic Information

Item Value
RNA id XM_039793267.1
length 2257
RNA type mRNA
GC content 0.54
exon number 15
gene id kynu
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19551436 ~ 19581258 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGTAATCCACGTTATCGTATGATGTGCAGTCGGAGTGAGCGGAAGGACTGTACAAGTTCTTCATCGCTCGGCCGGCGTGGTCTGACCTGGGTCGTGGACACTGAGAGCCAGATGGAGTCCACACTGGTGGCTGTAAACGGGGCCGTAGCAGGGGACAGGCACCGTGCTGTGCACGCTCACCTCGTGCTCTTTACCGTTCTCCGCTACGTGGAGCGAGTCTGGAGAAAACTGAAGAGAAACAGAGGGAGCAAAGAGCTGTCAGAAAAAGAGGTAGAATGCAGttTCAGCTCAACTCCGTTCCAGCTGCCTCCCTATCCCTCCGTAATGGACCTGTTAGTTGGCTCGACGGCGAGGGAAACCTTGGAGCGAGTTTCAGCTTTGCTGGGATGCGGTCCGACCGATGCAGAGGTGGCTGCACATCTGGACCAACACGACACCCTCAGACATCTCAGGGACCAGTTCCTGGTGCCCAAAATAAAAGATCTGCCTCCCTCTGATCTCTCGCTGGTCGACGGGGCCGAGGAATGCATCTACCTGGTGGGCAACTCGCTGGGGCTTCAGCCCAGAACGGCCCGGAAATACGTGGAAGAGGAGCTGGACAAGTGGGCCAAAGCGGCCATCCACGGTCACACCGAAGGCTCCCGACCCTGGGCGTGGGCTGAGAACAACATAGAGGAACTCATGGCCAATGTTGTTGGAGCGAAACCTGAAGAGGTGGCGCTGATGAACGGCCTAACGGTTAATCTCCACCTTCTACTGCTTTCCTTCTACAAACCCACATCAAGGCGGCACAAAATCCTCCTGGAGGAGAAGGCCTTTCCTTCAGACCACTACGCGGTGGAGTCTCAGATCCGCCTGCGAGGATTGGACCCTCAGAAGagcatgctgctgctgtcaccCAGACCGGGAGAAGAGACTCTGAGAATCGACGACATCCTGGAGGCCATCGAGAAGGAGGGCGACTCCATCGCTGTGGTGATGTTCAGCGGCGTTCAGTATTACACCGGCCAGCTGTTCGACATGGCCGCCATCACCGAGGCTGGCCAGAGGAAGGGCTGTTATGTGGGTTTTGACTGCGCCCACGCTGCGGGAAACGCCGAGCTCAAGCTGCACGACTGGGGAGTGGACTTCGCCTGCTGGTGCTCCTACAAGTATATAAACTCAGGTGCTGGTGGTCTAGCCGGGGCGTTTATCCACGAGAAACATCGAGACACCATCCAACCTGCGCTGCTGGGATGGTGGGGACATGACCTGAAAACTCGGTTCCAGATGAATAACGTCATGGAGCTGCAGCCTGGAGTGAGCGGCTTCAGACTGTCCAACCAGCCCATCCTGCTTGTCTGCCCCCTGCAGGCCAGTTTGGAGGTGTTTAACATGACCAGTATGCAGGCGTTGCGCAGGAAGTCTCTCCTGTTGACAGGCTACCTGGAGTATCTGATCCAGCATTATTACAGCGAGGACGCCGCTCAGCCTCACAAAGCCCACGTCCACATCGTCACGCCCTCGGACCCTCAGCAGAGAGGCTGCCAGCTGTCGCTCTCCTTCTCCGTCCCTATCCTGAAAATCTTCCGGGAGCTGGAGAAGAGGGGAGTCGCTTGTGACATGAGGGAGCCCAATGTGCTGCGAGTCGCTCCGGTGCCGCTCTACAACTCGTTTAGCGACGTTCACCGCTTCATCCAAACACTGGGATCAGCACTCACCGCCAGCAGCCAGTGAATGAACTATGTACTATAGAGGTCGACCAATAGTGGATTTTACCCATACTGATAGCTAGGTTGGGCCGTATTTGccgataaccgattaatcgactgatagtatttacactttgaatttcgtcataGCATTTATATAACAAATACTCtatggtcttacaaagctaacgtttttGACCGATTACAATTTAATCAATTTTTGTGACCTggagaggtctcgttaggaggaagCTAGCTATAGCTCTGTTTGCCATTTATTCCAATGGGGAAACATCGCGGCTAGACTTTCGACATACATTCCATTCCATTTTTGTGAATTAGAGAAGTCTcgtcagggcagcggcatttcGGTAAAACAGTAACCcagaaagggtgactttgcgccggCCGCAGAGCCCCGTTGGCTGCTGATAGCTCTGTgccgagtagcagtgcttcggctgtagcctacttccacccaatagtcccaagtcaacatctgcctaggaaatcatctagtcttaatctgcattgctatttttacccattgtgaatacgcaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638518.1 lncRNA downstream 3960 19532876 ~ 19547476 (-) True LOC120554578
TU320221 lncRNA downstream 24019 19526930 ~ 19527417 (-) False LOC120554050
TU320209 lncRNA downstream 48037 19503164 ~ 19503399 (-) True G235978
XR_005638282.1 lncRNA downstream 177859 19371461 ~ 19373577 (-) True LOC120554031
TU320188 lncRNA downstream 290604 19260568 ~ 19260832 (-) True G235957
TU320272 lncRNA upstream 2935 19584193 ~ 19586723 (-) True G236032
TU320255 lncRNA upstream 26371 19607629 ~ 19608353 (-) True G236015
TU320302 lncRNA upstream 52120 19633378 ~ 19633959 (-) True G236053
TU320303 lncRNA upstream 52846 19634104 ~ 19634355 (-) True G236054
TU320304 lncRNA upstream 53472 19634730 ~ 19635006 (-) True G236055
XM_039792647.1 mRNA downstream 22194 19523504 ~ 19529242 (-) True LOC120554050
XM_039793146.1 mRNA downstream 1028420 18465948 ~ 18523016 (-) False acvr2ab
XM_039793145.1 mRNA downstream 1028420 18465948 ~ 18523016 (-) True acvr2ab
XM_039793243.1 mRNA downstream 1112018 18406069 ~ 18439418 (-) False LOC120554371
XM_039793242.1 mRNA downstream 1112018 18406069 ~ 18439418 (-) True LOC120554371
XM_039793147.1 mRNA upstream 27364 19608622 ~ 19621651 (-) True bzw1a
XM_039792553.1 mRNA upstream 40844 19622102 ~ 19654312 (-) True aox6
XM_039793144.1 mRNA upstream 167813 19749071 ~ 19755969 (-) False pnpla4
XM_039793143.1 mRNA upstream 167813 19749071 ~ 19755962 (-) False pnpla4
XM_039793142.1 mRNA upstream 167813 19749071 ~ 19755962 (-) True pnpla4
TU319844 other downstream 1806236 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 2447919 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 2643018 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 2643614 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 2643951 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 150061 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 786083 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 1145145 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 1145272 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 1179450 20760708 ~ 20760992 (-) True G236349

Expression Profile