RNA id: XM_039793280.1


Basic Information

Item Value
RNA id XM_039793280.1
length 5591
RNA type mRNA
GC content 0.57
exon number 55
gene id col5a2b
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2844611 ~ 2872113 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGTATATGTGATATGGGGATGGTGGTTTGTGAGGACGTGGTGTGTGAGGATGTAGGTGACTGCAAGACCACTGAGACCCCAGAGGGCGAGTGCTGCCCCGTGTGCTTGGCTGACGCGTGGCAGCCTTACACAGACACTGAAACTGATTCCTGCACAGAAAATGGAAAAGTCTACGCCCACAATGACATGTGGAACCCGGAGCCGTGTCGGATCTGTGTGTGCGATATGGGGGCTGCTGTGTGTGAAAATGTGGTTTGCGAGGACCTCGGCGACTGTCAAACTGTGACCCCAGAGGGCGAGTGCTGCCCTGTGTGCCTAACTGCAGCTTCCACATCAACTCCCAGTGCAGACCCTATAACAGCTGCAGATGAGAAGAAAGGGGATAGCTGCACGGTCGATGGGGAGGTCTACCAGCACAACGACATCTGGAAACCCGAGCCTTGTCGCGTGTGCGTTTGTGACAATGGTGTCGCCATCTGTGACGAGGTGCAGTGTGAACTGCTGTCAAACTGCGAGAAGGTCGCCACACCCGAGGGGGAGTGCTGCCCCGTGTGTGACAGCTTTGCCAGCGCAAGCAGGAGGATAGAAATTATGGGCTACAAGGGACAGAAAGGTGAACCAGGTGATATCCCATATGTTGTGGGGCTCCCTGGACCTACAGGCCCCCCGGGTCCTCCAGGAGCTCAGGGATCCACTGGACAAAGAGGCTTTAAAGGCAGACGGGGATATGCAGGGCCTCCAGGATTTGACGGCGAGCCCGGTGTGCCAGGAAATCCAGGAGAGCCAGGAGCCCCAGGCCATCCCTCCCACCCTGGGGGCAACCTGGTGTCCCAGATGGCTTCAGGTTTCGGTGAGAAGTCTAGTCTGGCTGGGATGGTATCAGGATCAAGGGGTGAAATGGGACCAAGAGGACCTCCAGGCTCGCCTGGAAGTCAAGGTCCACCTGGAGTTCAGGGAACCCCAGGAGAGGGTGGAGATCCAGGACCAATGGGTGAGCCGGGTCATCGAGGACAAGATGGGCCTCCGGGAAAAACTGGTCCTGATGGAGAACCTGGACCTGACGGTGCTACAGGAGAACCAGGATTTCCAGGATCAGTGGGTTCAAGAGGGTTCCCAGGACTTCCAGGTCACCCAGGACTGAAAGGCCACAAGGGACATGCCGGTCTTCTTGGGCCAAAAGGCGAGCCTGGATCTGCTGGAGCCAAGggtaaatctggCACTCCGGGTGCAATGGGTGCTCCAGGCCCACAGGGACCAGCGGGCATGCAGGGAGAAAGAGGCCGAGCCGGACCAACCGGTCCTGTGGGCAAACGGGGTGCAGCCGGCCATGTCGGCAAACCCGGTCCTCTGGGTCCAATGGGAATCCCCGGTGTTGCAGGATTTCCCGGGAACCCAGGAATGAAGGGAGAAGCAGGGCCGGCGGGGGTCCGAGGAAGTCCAGGACAGCAGGGACCCAGAGGAGACGCCGGTCATGTAGGCCCCCCCGGGCCGCAGGGGCAGCAGGGCGCCTCAGGACCTGATGGAGCTCAAGGTAGTCGCGGCCAAGCAGGTCTAGCAGGTGTCCAGGGTCCAGCAGGGCAGTTGGGGCCATCCGGCGCCCCCGGCCCCCAGGGAATGACAGGAGCACCAGGACCTAAGGGCCAATTGGGCGAAGCTGGATTGCCTGGATTCAAAGGAGAAGCTGGAATTAAGGGAGAAAGAGGTGACCATGGTGCTCCGGGTCCGTTGGGCCCGATGGGAGAGGACGGGAAGCGTGGCCCCCGAGGTGATGCTGGATCCATCGGGCCTCCAGGATCTCCAGGGGAATCAGGCGCTCCAGGAAACCGAGGTTTCCCAGGTGCAGATGGATTACCAGGCCAAAAGGGAGCCCAAGGGGAAAGAGGACTGCCCGGGTCGGCCGGCGCCAAAGGTTTAGATGGAGATCCAGGACGTAGTGGGGAGCCAGGTTTAACAGGAGCTCGGGGTCTGACGGGACTGATTGGCGCCCAGGGATCAGAGGGAAAGCAGGGACCAATGGGCTCAGCGGGAGACGATGGCAAGCCAGGCCCAGCTGGTTCTACTGGAAACCGAGGTTCAGCCGGACCCATGGGTCTGCCGGGCCCTAAAGGCTTCGCTGGTGATGCTGGGAAGATCGGAGAAGCTGGCAGCTCAGGGCCTCCAGGTCAAAGGGGGGTGAATGGGAAAGACGGAGAGGAAGGTGCTGCTGGCGTAACCGGTCCAGCGGGTCCTgcaggaaagagaggagagcagggaCCACAGGGGCTGCATGGTTTCCAGGGTTTGCCCGGAACGCCCGGACCACCTGGAGAGTCAGGAAAACCAGGGGCTGAGGGTCTTGCTGGAGAGGCAGGTGCAGCTGGAGCTACAGGTCCGAGGGGAGAACGAGGCGCTCCAGGAGAGAGGGGTGAAATCGGGCCCAATGGGCTGCAGGGACCCAAAGGTAGTCCGGGTGGACCAGGACCAGATGGGCCCAAGGGTAGCATTGGTCCAAAGGGCGCTGCCGGAGAGCCAGGAGGTCCAGGACTCCAGGGGATGCCAGGAGAGAGAGGCTTATCAGGACCTTCAGGCCCGAAGGGAGATGCAGGCTCTGTTGGAGAGAGCGGAGCCGAGGGGAAAGTTGGAGCTGATGGAGCACGGGGTCTTCCTGGTTCTGTTGGACCTGTCGGTCCCAGTGGACCCAACGGAGAGAAGGGAGAAACAGGCCCACAGGGACCTGCAGGACGCCGAGGCACAAGAGGAATCCCTGGTTCTTCTGGTGAACCTGGTCCAACCGGTGCTGTCGGCTTCCCTGGGACTTCTGGTCCTGATGGTCAGCCTGGGGTTAAAGGCGAAACGGGCGAGCCCGGACTGAAGGGAGAGGGAGGGTTACCTGGACCCCAGGGGATGGCTGGGAAAGCTGGAGGACAGggACCAGTTGGTGTGACTGGACTGAAAGGTGCTAGAGGAACACAAGGTGTAACGGGCTCCGCTGGTTTCCCTGGGTTGCCTGGAGGAGTTGGACCAGTTGGCTCTGTTggtgCTGTTGGCGCCGACGGGCCTATAGGTGCTCCAGGAAAGCAGGGACCTCCTGGGATTATTGGGGAGAATGGATCCACAGGACGTCAGGGAGAGAGCGGACCTTCGGGTGCACCCGGCAGCCCTGGAGAGAAGGGAGAATCTGGAGAGGACGGCGCTCCGGGGCCTGATGGGCCTCCAGGACCTGCTGGCACCGCAGGCCAGCGAGGGATTGTGGGTCAGCCTGGACTGAGAGGAGAGGCGGGCATGCTGGGACTGCCCGGTCCTGCTGGTCCACCTGGAAAAGCCGGAGCTGCTGGAGTTCAGGGCAGCAAAGGGCCTGCTGGTGGAGTTGGTTTACCGGGAGCCACGGGGCCAAGAGGAGAGCCCGGCCCTGAGGGAATCGCTGGAGCAGAGGGGCCTCCTGGGAAGGACGGTCTCATAGGGGAAAGGGGAGACAAGGGTAACCCTGGTCCAGAGGGTCTGGCTGGAGCTCCCGGGTCTCCAGGAACAGATGGTCCTGTGGGGGTGACGGGCGGTCCAGGACAGAGAGGCGATAACGGTGCCAGAGGCTCCTCTGGACCCCAAGGACCACCTGGAGTACGAGGAAAAGTGGGCCCTCAAGGACCACAGGGAGAGAAAGGAGCAACTGGAGAACAAGGAGAGAGGGGACAGAAAGGACACAGAGGTTTCACTGGGCTCCATGGTTTGCCAGGAACAACTGGCCAACAAGGGGAGCCAGGAGCGACCGGTATTGTTGGACCAGCTGGGCCGAGGGGTCCTCCAGGAGTGTCTGGTCCCCCTGGAAAGGAAGGAAACATCGGTCAGCCTGGACCAATGGGCGCTCCCGGAAGCAGAGGCTCCATCGGGGACATCGGCGCACATGGTCCACCTGGCGACGACGGGCCGGCCGGCCCCCCAGGCCCCCCCGGACCACCCTCCGCAGTTATGGAAGACCTCTTCGCTGCCCCTTACGATTACGACGGGACAGGCACTGTGCCAGAAGCTGTGGAATTTGTCGAGGACGATGTGGCTGCCGATCCTCCTCCACTTCCAGAGATGAATAAAGATGAAGCCCTTCCCAATAAGAACTCTGTCCTCCTGCGTGCAGACACGGGAGTCCACGCCACGCTGAAGACCCTCAGCGGACATCTGCAGAACCTCCGCAGTCCTGACGGCAGCAAGATGAACCCCGCCAAAACCTGCCAGGACATCAAGCAGTGCTACCCTCAGAAACCGAGCGGTGAGTACTGGATTGATCCAAATCAAGGAAGCACAAAAGATGCCATCAGAGTTTTCTGTAATATGGAAAGTGGTGAGACCTGCATCTCCGCCAATCCGGCCAACATTCCCCGCAAAGCCTGGTGGACGAAATCCATTCCCAGCGCCAGCAAACCCGTCTGGTATGGAGTGGACATGAGCAGTGGAACCAGATTCCGCTATGGAAATACGGAGGAGCAACCCAATGCGGTGGCGGTTCAGCTGAAGCTGCTGCAGCTTTTGTCCAAAGAGTCTCACCAGAGCATCACCTACCACTGCATGAACAGCGTGGCTTATAAAGACGCGAAGAGCACCAACCTGAAGAAAGCTCTGGTCCTCCGAGGCTTCAACGGCCAGGAGCTGAGAGCGCAAGGAAACAACCGCCTCCGATACACCGTCATCGAGGACGGCTGCTCGatCTCAAACGGAGAGTGGGGCAAGACAGTGATTGAGTACAGGACTCAAACTTCGGCCAGGCTGCCCGTCGTGGACGTGGCCCCCATGGACGTTGGAAAGCCTGATCAGGAGTTCGGCCTGGACATTGGCCCTGTGTGCTTCTCCTAAAACAAACGCAAGATGGACAGAAACAGCCCTTTTTTTCGAGGAGTAACatcatcagaaaattatagcaTACGGACTCCTCTTTCTGTGAGCATACAAGTCGATGGTTAGATTTTTCTACACATGGCTGCATTTCCCATAAGCTGTTAAAGTACCTGCTGTGTCTGCGAGACTTGTGTGACCGGTAGGACATAATTTATTCACCTTGTCAATAGATGTACAATCTGGAGCACCAGTACTCTACAGGGAAATGCATGTGGGTGGAAAAGATAAAGTCTGAGGTGCTAACATGAAACGTGAATGAAAACGAGGAGTTTAGATGGATTGTAAACTTGCATAAACTGGAAAAAGAGCCAATAATATTAAAGCTTAAAGCGATGTGGTCTCAGAGCAGATTGCATAAGAACTGTTTATAGCCAATAAAAACCTTTTTcatttggcctttttttttttttccagtacaTGCACGTCCAGAAGCCGGGATATGGCAAGTGTTAATATAGCAATGACTAGTTCTTAATTTTAAtggaataaaaactgaaaattatGCTTGAACCTAAATTATTAAGTTCTGTGCAGGAACTTTACGCTTTCAACCGAAAACCTTTTATCTCCTTTTTAAAAACTTCAGCTGTAAATGCAACATATGACTGTAAATTGCAAATGATTTGTTTGTTGTTGACTTTGGATGTGGAATAAATATCTTTCTTTGGAATGACTGTGGTCAAACCAAAGCAGGAAAGTTGAATAAACATTTGGTTTACCCCCCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314863 lncRNA upstream 14247 2836601 ~ 2838555 (+) True G232020
TU314861 lncRNA upstream 17599 2834465 ~ 2835203 (+) True G232018
TU314818 lncRNA upstream 132400 2718593 ~ 2720402 (+) True G231986
TU314816 lncRNA upstream 135973 2714977 ~ 2716829 (+) True G231984
TU314798 lncRNA upstream 142641 2706533 ~ 2710161 (+) False LOC120554414
TU314867 lncRNA downstream 6732 2878845 ~ 2881730 (+) True G232023
XR_005638421.1 lncRNA downstream 37213 2909326 ~ 2912716 (+) True LOC120554419
XR_005638423.1 lncRNA downstream 37213 2909326 ~ 2912716 (+) False LOC120554419
XR_005638422.1 lncRNA downstream 37213 2909326 ~ 2912716 (+) False LOC120554419
TU314886 lncRNA downstream 39163 2911276 ~ 2912702 (+) False G232035
XM_039793309.1 mRNA upstream 62129 2787426 ~ 2790673 (+) True LOC120554411
XM_039793300.1 mRNA upstream 70887 2757590 ~ 2781915 (+) True LOC120554407
XM_039793292.1 mRNA downstream 18437 2890550 ~ 2895855 (+) False zswim2
XM_039793290.1 mRNA downstream 18476 2890589 ~ 2895855 (+) True zswim2
XM_039793291.1 mRNA downstream 18496 2890609 ~ 2895855 (+) False zswim2
XM_039793315.1 mRNA downstream 648619 3520732 ~ 3539041 (+) False LOC120554431
XM_039793314.1 mRNA downstream 653428 3525541 ~ 3539041 (+) True LOC120554431
unassigned_transcript_1551 other upstream 42762 2809968 ~ 2810040 (+) True trnar-ccu_19
unassigned_transcript_1550 other upstream 43218 2809512 ~ 2809584 (+) True trnar-ccu_18
TU314015 other upstream 754053 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 757403 2095271 ~ 2095399 (+) True LOC120554798
TU313851 other upstream 1077189 1761868 ~ 1775613 (+) False G231461
TU314879 other downstream 27700 2899813 ~ 2906486 (+) True G232031
TU315244 other downstream 681465 3553578 ~ 3590879 (+) True LOC120554435
unassigned_transcript_1554 other downstream 1328449 4200562 ~ 4200634 (+) True trnam-cau_63
unassigned_transcript_1555 other downstream 1328737 4200850 ~ 4200922 (+) True trnak-cuu_16
unassigned_transcript_1556 other downstream 1328976 4201089 ~ 4201159 (+) True trnag-gcc_24

Expression Profile