RNA id: XM_039793385.1


Basic Information

Item Value
RNA id XM_039793385.1
length 3486
RNA type mRNA
GC content 0.52
exon number 18
gene id dzip1
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 5094251 ~ 5108905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGGTCTTTTTTGTAAGCAGGGATTTAGGAATGTGGAGACCAGCAGCTACGTCACCCTGAAATCGCCTGGGGTCCAGTTGCAAGAAAACTTGTCCAAAGGCTGTGAATTAGTAACACAAACCCTCCGTCTCTGTCTCCATGGTAACGTGGCGGACGCCCAGCCTCGGCGTTGTCGCGTTGAGCGTTGAGCTGACTGCAAGGGGGCGGAACCGGAGAGGAACAACCGGGAACAACGGGTCTTCGATTTCTTTCTCTCCGTAAAGGCGTAATCAGTCGAAGATGGTAAGGAGAGCGCAGCTGCATCAGGACAGCGACAGCATAATAAATAGCCATTTCACAACGGAGCATACTACCCCTACACCAGTGACACCCAGGGGACCCACTCATCAGCAGGGGTCCCGTCCCTCCTGAATTCCCCACTCAGCCAGCACTCTGTACCTTCATCCAGCATGACTCCGTCCAGCGGAGCCCCCACCATCCTTCCTTTCAAGTTCCGCCCGCGCAGGGAGAGCGTGGACTGGCGGCGAATTAACGCCGTGGACATAGACCTGGTGGTGAGCCAGCTGGATGTGGACGCCCTGCAGGAGCACATCAGCAGTGTTACGTTCTGCAGCTTGGACGGGGAGCGATGTCAGCGGTGCCAGTGCCCTGTGGACCCAGCTCTGGTCAAGCTCTTGCAGCTGGCCCAGCTCACAGTGGAGTGGCTCCTCCACTGCCAGGAATTTCTCACCCTCAACCTGCGTGCAGTGGAGGAGCGGTTGGCGGCCGCTGACAGGGACCGCGAGCAGCTGCTGGCCCAGCAGAAGAAGCAGGATGAGAAGGTGAAGACGCTGACCGCCGAGCTCAAGCAGAGGAGGAGGGTTATCCGCACCCAGCAGTCCATGCTCACGCCACGAATCAGCAGCAGCCACAAGtGTCCACATTGTGATAAATCCTTCCTCAATTCCTCGTTTCTCCAGAATCACATGCAGCGCCGCCACCCTGACGAGTATGAGATTGAGATGCGGTCAGACAGTGAGAAGAAATCTCAGATTGAAAGCCTTAAATTGGAGATCAACGGTCTGAAGGAGCAGATTGTTCAGCAGCAACAGGACTTGCAAGCCAAAACAGCTCAGGAAAAAGAGCAGCAGTCCATGCACAGGGACCTGCTGAGAGAATTGGACCGTTTTAAGGCTGAGGAGATGGCACGCATGGACAGAAAGATAGAAGACAGCAGGGATGGCATGCGTAGGGAGATGGAGTTTCTTTACACCCGAAATGTTCAAGCTCTCAATgaAGCAAATCAGAATCAGACAGCCAGGCATGAAAAACCAGCCAGCCCTGTTCAGTCGCAGCCCGAGAGAGATCTGGACAACTACAAAGAAATGCAGATACAAGCCATGCAAAAGCTGGAACATCAAATGAAGAAACAGGACAAAAAGTGGGGATCCAGGCTGCAGGAAATAAAGGCCCAACACGAGTCTGAAAAGAATCAGTTGCTGAACGAGTTGAGCAGAATGCAGTTGTCTGTGTCGGAGCACCAGGAGAGCAGCCACAGGCTGCAGCAGGAGATGAGCAGGAGGCTGCAGGAGAAGGAGCAAACCATCCGGGCTCAGAGGGAGCAGATAAGGAATATTTCCTTAAATCCACCCACCAAAATAGTGGAAGTACCAGTCATTGCCAGTGCACCAGCTCCAGAGCCTAAACCAAAAAGAGTTGTACTTGACTCAAGCAGCTTCTCTGAGAGGAGGCCAGTGGAGAAGAAGCCCGAGCCTGTACCAGAGAAGAAGCACAGGATGACCACCAGTGCTCTAAAAAGGAACCCCAACATCAAGAAAGAGATGCGGCCAGATCTTGAGCAGGCTGTTATTGAGAAGCTGGAGAACCTGGGAGTCAAGCCTGATCAGAGTGGTCTGAAGGACAAAGAGCTCGCCTCCATCCTGGCCAGGGTGCATTCGAAGCGGCAGAGCATTGCAAAGGGGATGCCTGAGTACTGGCGCCATCGGGAGGAGATAGCCAGCACTGTGGAGCAGAAGCTGGGTGGTCAGAGGAGAGGCAGCGACCCTGCTCCTGAGTCACAGGCCAGATCCAGACAATCGGTTCAAGTGTTGCAGATCCGCCCTCGATCCAGTAGCCTACCCTCCAGAGCGACCCAGGTGGTGTCTGGACCTGCAGTCAAACAGCCCAAGACCCCCCAGCCGGCACCAAGGATCAAGGACACCACCCAACCCAAGACATCTACACCCAAGGCTGCTCTGAGGACCTTCGCATCCAAGACCCCTCCTTTCAGTTCAGATGAAGAATCTGAAGAAGAGGACACAGACATGGAGCGCCAAAGACACCACAGGGGCAAATCACCACAGCCCAGACTAAACCAGGTCCAAATCAGAGCAAGCAAAGCCAGTCCGGTCCAGGCTAGGCCGGCTCCAGCCAGCCACTCGTTCTCCTCCAACCCCCAGCAGGCCAGGGGGCCAGTCGGCGGTGTGACCAGGACTACAGTCACAACGATGGAGAGTGATGACGAGGAGTGGTCCGAGGTCAGCGAGCTGCAGGAGATCGACCCAAAGCGTCTCCAGACTTACAAAGACCAGAACGGCAACGTGGATAAGAGAAACTTTGGCATAGAGAACAAAATCAGTGACATGGCCAGAAAAATGGAGAAGCAGTTTGCAGAGAGAGCGATAAAGAAACCAGCAGGGGGCGTCAGCATCTTACCAGAGAGGATGGACGAGGTTCAGGAACTCACGTACACAGATCTAGAGGAGAGCAGTGAGTGGGTGGTCTCCTCCTTAGAGGACAAACCGGAGACGTCGAAACCAGCTCAGGGCTCTGGACCAATGAGGAAGAGCCTGGACTCACCCAGCACCAGTGTCTGGGGAACCTCCACAGGAAGGGGTCCCAAATCAGGTCTGACTGAAGCAGGAACAGGAAGCACCCTAAAGAGCAGCCTGTGCTCCCTCAGTGACATCAGCGACTCCGAGGACATTagcaataaataacaataaacactaCAGTTGATCAGGTGATGTAGCTCTACGCAAAGCACAGACACAAAAGACCTCAGTCAACTCTTCTGACACCTACAGTCCATGCCAAATAGCCATATTTCATACTGTTATTATAGGGAAGCTATGATCGAGAGAGCAATACTTAACAAAGCGACTTTGGATTCAGACATTTGTATAGAAAAGAAGACCATCTAATAAATGTGTTAAAGATAAATTAGATTACAGCTTCGGTCGATCCGTCTCACCTAATGCCTTGTGCCAATTCTTTGCTTGCCTTAGATTATACTATTTTCAGTGTTTAACtctaaatattctttttttcatttggtaTATTCACTGAATTATAACCCACACTCCAAATGAGATGGTGTATGTGGTTTGTGTAAAATTTTGTACATCAAATTTTATAATGCCTTCATGTGTTAAATGAAGCAATGAGATGGGATTTTGTATAGCAACTATTTATACAAGCAATAAAAGATTTCTTTGTGGAATACA

Function

GO: NA

KEGG:

id description
K16470 DZIP1; zinc finger protein DZIP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315784 lncRNA upstream 8126 5060799 ~ 5086125 (+) False LOC120554502
TU315783 lncRNA upstream 9912 5060799 ~ 5084339 (+) True LOC120554502
XR_005638483.1 lncRNA upstream 11762 5060887 ~ 5082489 (+) False LOC120554502
TU315734 lncRNA upstream 52798 5037904 ~ 5041453 (+) False LOC120554464
TU315732 lncRNA upstream 61860 5031651 ~ 5032391 (+) False LOC120554464
TU315819 lncRNA downstream 7137 5116042 ~ 5116391 (+) True G232670
TU315836 lncRNA downstream 42078 5150983 ~ 5191290 (+) True G232680
XR_005638470.1 lncRNA downstream 63484 5172389 ~ 5180266 (+) False LOC120554496
XR_005638477.1 lncRNA downstream 63484 5172389 ~ 5180266 (+) False LOC120554496
XR_005638473.1 lncRNA downstream 63484 5172389 ~ 5180266 (+) False LOC120554496
XM_039793405.1 mRNA upstream 39269 5051007 ~ 5054982 (+) True LOC120554486
XM_039793390.1 mRNA upstream 43389 5044021 ~ 5050862 (+) True LOC120554477
XM_039793369.1 mRNA upstream 52369 5003321 ~ 5041882 (+) True LOC120554464
XM_039793368.1 mRNA upstream 52369 5006907 ~ 5041882 (+) False LOC120554464
XM_039793367.1 mRNA upstream 52369 5006943 ~ 5041882 (+) False LOC120554464
XM_039793365.1 mRNA downstream 25951 5134856 ~ 5166194 (+) True LOC120554463
XM_039793366.1 mRNA downstream 25951 5134856 ~ 5166194 (+) False LOC120554463
XM_039793427.1 mRNA downstream 184262 5293167 ~ 5306737 (+) True acp2
XM_039793812.1 mRNA downstream 211213 5320118 ~ 5335281 (+) True txndc16
XM_039793428.1 mRNA downstream 274258 5383163 ~ 5428369 (+) True nid2a
TU315733 other upstream 63574 5029855 ~ 5030677 (+) False LOC120554464
XR_005638464.1 other upstream 145162 4848638 ~ 4949089 (+) False LOC120554485
TU315505 other upstream 676149 4417164 ~ 4418102 (+) True G232425
XR_005638583.1 other upstream 855296 4238873 ~ 4238955 (+) True LOC120554801
XR_005638582.1 other upstream 855641 4238527 ~ 4238610 (+) True LOC120554799
XR_005638491.1 other downstream 379256 5488161 ~ 5491967 (+) False LOC120554524
XR_005638492.1 other downstream 379256 5488161 ~ 5491967 (+) False LOC120554524
XR_005638493.1 other downstream 379256 5488161 ~ 5491967 (+) False LOC120554524
TU315928 other downstream 385706 5494611 ~ 5498489 (+) False LOC120554524
XR_005638507.1 other downstream 696130 5805035 ~ 5813194 (+) False fdx1

Expression Profile