RNA id: XM_039793526.1


Basic Information

Item Value
RNA id XM_039793526.1
length 4058
RNA type mRNA
GC content 0.45
exon number 3
gene id filip1l
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12797844 ~ 12885098 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCCCTTATTGTTTGGTCTGACTGCAGGAATGCCCACATTACAGCTACTAAgagagtcagacacacacagagaggaagagttGAGGGTCGGGTGTTGTACGGCAAGATAATGAGCTTATGGCAGTGAAGCCGGGAGAGCCTTTGGCACAGgTTGAAGGTGTTAATTGATCAGGAAAAAGCCTACCAAGAAAGAAAGGAGGACGAGAACAGCAAAAAGGTCACAAGTCTGAAGGAGGAGCTGACAAAACTCAAGTCATTTGCGTTGATGGTTGTGGATGAACAACAGCGTCTCACTGAGCAGCTGAATCAACAAACAGCAAAGGTCCAAGAACTGAGTGCCAGTGCTTCACAAGCCCAGGAGGAGCTGAGCTCAGCCAATGCTCGTCTGCAGGAAGAGGAGCAAAAGGTCTTTCGCTTGGAGGCTGAGCTGCGTGACCAAGCCAGTCGATACCACCAGGAACAAGAGGCCATGACTGCCAAATTGACCAGTGAGGATGCCCAAAACAGGCAGCTGCGCCAGAAGCTGTCAACTCTCAGCAGGCAGCTTGATGAGCTGGAGGAGACCAACAAGACCCTGCGCAGAGCTGAGGAGGAACTGCTGGAGCTGAGGGACAAAATTAGCCGTGGTGAGTGCGGAAACTCTAGCCTCATGTCTGAGCTTGAAGAGTTACGGAAAAGGGTACTTGAAATGGAGGGAAAGGATGAAGAGTTGATCAGAATGGAGGACCACTGCAGGGACCTCAACAAGAAACTGGAGAAAGAGGCCAATCAAAGCCGGAGCTTGAAGGCTGAAGTCGATAAACTGAACCACAGAATTATGGACTTGGAGAAATTGGAGGACGCATTCAGCAAGAGCAAACAAGAATGCAACTCGCTTAAAAGTAACCTGGAGAAGGAGAGGACAGTGTCAAAGGTTCTGACCAGTGAGCTGGAAGTCTTGAAAGTCAGGGTCAAAGAACTGGAGGCTGCTGAAAACCAACTGGGAAAGACAGAGCTGACACTGAAGGAAGATCTAACCAAGTTAAAGACTCTGACAGTCATGCTGGTAGATGACAGAAAGGCAATGGCCGAAAAGCTAAAGCAAATGGAGAACAAGGTCCAGAACAGCACTGGCAaacttcaggctgaacaggacaAAGTTACATCAGTCACAGAGAAGCTAATTGAGGAGAGCAAGAAAGCACTGAGGTCAAAGGCTGAGCTGGAGGAGAAAATGTGCGGAGCTACAAAGGAAAGGGACGACTTGAAGGCCAAGCTGAGCGCTGAAGAGGAAAAGAGCAATGATTTGGAGTCTAAGATCAATATGATGAAGAAAAGGTTGCAATCGCTTGAGAACATAGAAAGAGAATATGTGAGAAGCAAAGCTAAAGAGGAGCACATCAAAACACCCATTGCTAACCGCTTTCAACAAGAAGACAACAAAGTCAAGGATTTGACACAGGAGGTTGAACGCCTCAGACGCAAATTAAAGGACATGAAAGTGGTAGAAGGTGACCTCTTAAAAACGGAGGAGTTTGAATCGCTGGAGAAAAGATTCAACAATGAACAAGAGAAAGGTAAAGCCTTGATGGAGGAGCTGGAAATATCCAGAAAAGAACTTTCAAAGTACCAACTGGCTGAAAAGAAAGAGTGCAATCAAGAGCATGTTCTTTATAAACGcctgaaggaggaggaggcaaaGTCTAGTCATTTGACCAGAGAGGTAGCAGCTCTGAAAGAGAAGATCCACGAATACATGGGAACAGAGGAGTCAATTTGCCGCATGAAAACTGACCACTCGACACTCCAAAGAAAACTGACCCAGCAGGAGGTCCGAAACAAAGAACTGGCCAGAGAAATGGAGACACTCACAAGAGAGCTTGAGAGATACAGACGCTTTAGCAAAAGTCTTCGCCCTGGCATGAATGGAAGGCGCTTTTCAGACCTTCACGTTTCCACCAAAGAAGTTCAGACAGAGCCACTTGACTTCATGTCTCCCAACTGTAAGACAATGGCGCCACTGGAACGTGCCGTGGTGAACGGGAAGCTGTACGACGAGAGCGAAGCTGAAGAAAATGCAAACTACAGCAACGAGCTTCAGCTCACCAAATGCAGCCCCTCACTTATCAATAACGTGAATAATCTAAACAACTTGAGAAGAGCTCGGGTACCATTCCTTAAAAACAAAGACACCCCCTGCCAGGTGAATGGTAAAGTGCAACCGCGGCAGAACGGCAACCACGTTCAGCCCGGAGATGTTGTGTTGACCCACAGTCCTGGGCAGCCTCTGCACATTAAAGTGACTCCTGACCACGGACATAACACAGCAACACTAGAGATCACCAGCCCAACCACAGAAAACACCCAGTCATTCACTAGCACTGCCGTCATACCCACAAGTGGAGGTCCACCCAAACAGAGAATTACCATCATCCAGAATGCTTCCATATCCCCTACTGCTAAATCCAATTCCCCAACAACAAAATCTAAAAGTTCCCCAATCTCTGACGAACCGTGTTCACCAGACAGGGCCCTATCACCTTTCACTGTGGCTACGTACTCACGAGCAATTACTCCAGACTCTTGTGGCTCTGTAACACCAGACAGAGCCATGTCACCTATACAAATCGTGTCGGTCACAACAGGCACCCCCGAGCGCTCCCTCTCCACAGAGCCTGTGGAGGTTGTCGGAGGGCACGCCATCTTCCGCGTGACCCCGGAAAGACAAAGCAGCTGGCAGGTCCAGAGGTCTAACAGCTCTGGGCCCAACGTCATCACCACGGAGGACAACAAAATCCACATTCACTTAGGGAGCCCCTTTATTCAGAGCATCAGCACTCCATTGCAAACACTGAGTCCGTGCCACACACCTGGACTCCAGGAGCAAAGGACTCAGGTGCTTGCAAATTGCAGCACTCCTACTGCCAAAGGCAACAGCAAAATCACAAGTAGCATCATGATTAAGCCCACCTCCACCCCAATCCAAAGGCCGTCACAAATTACAATACCTCTCGAAGCATTCCGACGGCCAGGACCTACAAGAATCCCCAAACCTAAGGGCTACGGCTCCCAGAAAGGGACAAACAGCACGGCAGCAGCCCTGGGACCGCAGAGCAAGAGTCAGCCCCCACACACTCATCCAGCCACTGGGAAAGAGCAGCCCCCACACACGGCTGCAGCATCACACATCAGCAACAACAACCCAAATCTAGTGAACCGCAGactctaatttaaaaaaatatatatatatatgtttttaggGGCTGAGGGTCGGCTTATATTTCACCGCAACCAAAATCATCCTCATAGTTACTTCATATGTTAAATGGAATATCTAAAAATCTAAAATCACTGTGTTTTGCATAAAGACTACCTGGTGATtgctaaagaaaaaataaaattgtaacAGTAAAATTTTAACTGTCAAAGTACcgcttaataataataataataacaataatacatttattttatatagagCTTTAAAGGGTACTCAAAGGCACTTTacaaggaaagaagaaagaaaaacaataagATCAGTAtcaaaacaacaataacaactagagataaatataaaaaaatgtgcagtcattctttttgtaatctttCAACTGTTCTACTATTACCTAATCCTCATCCATGGTGCTCCGAAGACTGCTAAATACAACAGATTGTTTTTGTCAATATGTTCTATGTGTACACAATGTATTAGCTGTAAATAAACCTACACAACATTTAAGGCAGTAGTTCCAGTGTGACAgattttttgtgaatttgaTTTCACTGTGATCAAAATAAATTCAACTGAAGTGTAATACTAGAACATTACGTATGCCATGTGTTATGTCCTTGAAAGAAAAGGTTTCTTTGTATTGTGTCAGCATTTGAACTGATCTTTAAGTACTTGACCTGTCGAGATGTTCAGATAATGACACAGCCATTTATCTAATTCTCGGGATGGAAcacatggatttttttttttttaaataagtggcAATAATGTACATAAGTGTATAAGTTATGTGTTGTAATGCAGCACCGTGATAGTTATAAGCTCTAAtatgtgacatttgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318280 lncRNA downstream 11907 12783991 ~ 12785943 (-) True G234375
TU318278 lncRNA downstream 17690 12779586 ~ 12780160 (-) True G234373
TU318234 lncRNA downstream 308842 12487905 ~ 12489008 (-) True G234333
TU318227 lncRNA downstream 310520 12436996 ~ 12487330 (-) True G234330
TU318222 lncRNA downstream 363107 12432847 ~ 12434743 (-) True G234328
TU318363 lncRNA upstream 174611 12988373 ~ 12991438 (-) True G234434
TU318408 lncRNA upstream 347970 13161732 ~ 13162096 (-) True G234478
TU318420 lncRNA upstream 386216 13199978 ~ 13200294 (-) True G234490
TU318421 lncRNA upstream 389160 13202922 ~ 13205960 (-) True G234491
TU318463 lncRNA upstream 617219 13430981 ~ 13439811 (-) True G234523
XM_039792660.1 mRNA downstream 153493 12602244 ~ 12644357 (-) False LOC120554061
XM_039792658.1 mRNA downstream 153493 12602244 ~ 12644357 (-) True LOC120554061
XM_039792661.1 mRNA downstream 153494 12602244 ~ 12644356 (-) False LOC120554061
XM_039792659.1 mRNA downstream 154877 12602244 ~ 12642973 (-) False LOC120554061
XM_039792657.1 mRNA downstream 414836 12368396 ~ 12383014 (-) True obsl1a
XM_039793135.1 mRNA upstream 137659 12951421 ~ 12954215 (-) True LOC120554312
XM_039793818.1 mRNA upstream 140344 12954106 ~ 12959563 (-) True LOC120554795
XM_039793136.1 mRNA upstream 148113 12961875 ~ 12984575 (-) True gk
XM_039793137.1 mRNA upstream 148113 12961875 ~ 12984574 (-) False gk
XM_039792859.1 mRNA upstream 179076 12992838 ~ 12995995 (-) True mtrf1
TU318109 other downstream 504707 12287920 ~ 12293143 (-) False G234253
XR_005638322.1 other downstream 1355924 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 1750891 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 1828740 10967423 ~ 10969110 (-) True G233954
TU317708 other downstream 1847221 10949523 ~ 10950629 (-) False G233954
TU318311 other upstream 139328 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 172055 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 242854 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 298396 13112158 ~ 13112228 (-) True trnag-gcc_27
TU318891 other upstream 2034072 14847834 ~ 14849737 (-) True G234898

Expression Profile