RNA id: XM_039793538.1


Basic Information

Item Value
RNA id XM_039793538.1
length 1510
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120554576
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14615057 ~ 14636819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAACGCCGGTCAGGAGGAGGAACACCATCCGCCGTTGTGCCGCCTAGAGGTCGGAGGGAAACTTTGAAATTATACTCACAAGGAAAGTAGAATCAACAGCAGAAGTAGAAGAAGACCATAAACTCCGACCGTAACAAGATGTCAGGATCATTAGGCGGGAAATCGCTAGCTCTGACTCATGGCGCAAAGATGAAGGCAAGGAAACAGggTGGTTTTGTCAGAGTGAGGAGAAGTGATTTAGAGAAGTTAACCACAGAAGTCATGCAGCTGAGGGAGTTCCTGCCCAGAGTTCTGAATGGGGACCTGATAGAAATGCTGCATAAAGCTCGAGCAGCTCAGACAAtgaaGGAGCACCTTGCGCAGGAACAGAAGCAGCTGCGACAGGAGTGTCTACACCTTCAGTCCCGATTGGATGCGGTGCAGACTGAAtgtcagaaagagagggaggagaaGCTGCTGTTACGTGAACAGCTGTGGCAGAGCGGAgcagagctgcagcagcaggcagACTTCTGCTCTGGTCTGGGATCTGCAACCTGCAGTCTGCTGTGGAGTTGCTCTTCCAGTGAGGACACGGTCACACGCTGGCTTGCTGATGGGAAGCTGCAATCCTTCCTGGCTGTAGCTGCCCAGACTCTGGAGAGTTTCGTCAGGTCTCTGGACGAGGAGGCAAAAACTCAAACTGAGGACCACAACTCCCAGGAGCACCAGTTTGTGCTTGCTCTGGCTGGAACCATTACAAACATAGCAGCCGTAACACGTGGCCGGGACTTCCTGTCAAGCTCTGTCCTACTGGACACTCTGATGAAGCTTTTGGAGCTGATGAAGCCCGGTGTCTTCCCAAAACTGAAAGTGTTGATGCTGATGGCTCTGTATAATGTCAGCATCAGTGTTAAAGGACTGAAGTGCATCAGTGAGAACCCAGGACTCCTGCCTCTCATCTGGACCCTGCTGGACGATGGAGACTGGGAGGTGTGTCTTCACTCTCTGCGTCTCCTGCAGTCGGTGTTGTTGGAGGAGGAGGTGCTGCTCCTGCTGGGCTCTGCTCTGCTGGATCCAGACCTCCATGCTCGTGTCAGCCGGCTCACCTCCAGTGTGCAACCCAGCCTGAGACTGGCTGCCCAGCAGACCATGGAGGACCTGCAGGCCCTCCAACAgGGTCGGGGATGTAAGCAGAGCGGCCTCTGATGGGGATTCAGTATCTTCAGTCCAGCCTTCCTTCTGTGTTAACTTTCCTTTCACGTCACATTACATCTGTCTGTGATTGTACACTACGTTCAAACtgaggagaaaaggagagagaggtagaAATGAAAGATTTCATCAAAGTTAAACCTATTTATCAAGGTAAAAGCAACAGCCTTTTATATCTAAATTTTAAtagctttctttttttacttgcaCTGTTCATTGTTGAGCCTTCAGGTTTGTTCCCATGATTGTGTCTTAATGGTTGTGATTACAGGTTTGTACAAGACACATTAAAGATGATGTTTGCACACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318758 lncRNA upstream 141412 14473448 ~ 14473683 (+) True G234777
XR_005638308.1 lncRNA upstream 153344 14448891 ~ 14461751 (+) True LOC120554077
TU318739 lncRNA upstream 168833 14438958 ~ 14446262 (+) True G234763
TU318696 lncRNA upstream 258417 14356076 ~ 14356678 (+) True G234721
TU318695 lncRNA upstream 261445 14353419 ~ 14353650 (+) True G234720
TU318824 lncRNA downstream 8783 14645602 ~ 14646219 (+) True G234838
TU318827 lncRNA downstream 11305 14648124 ~ 14649049 (+) True G234841
TU318858 lncRNA downstream 229486 14866305 ~ 14887613 (+) True G234869
TU318885 lncRNA downstream 366810 15003629 ~ 15013712 (+) True G234895
TU318905 lncRNA downstream 383413 15020232 ~ 15020564 (+) True G234908
XM_039793717.1 mRNA upstream 16157 14589062 ~ 14598938 (+) False ccdc14
XM_039793716.1 mRNA upstream 16158 14589062 ~ 14598937 (+) True ccdc14
XM_039793641.1 mRNA upstream 28352 14571126 ~ 14586743 (+) True ddx4
XM_039793642.1 mRNA upstream 28352 14571126 ~ 14586743 (+) False ddx4
XM_039793119.1 mRNA upstream 70477 14531790 ~ 14544618 (+) False LOC120554303
XM_039792595.1 mRNA downstream 4894 14641713 ~ 14645495 (+) True cryaa
XM_039792676.1 mRNA downstream 14323 14651142 ~ 14794465 (+) True LOC120554076
XM_039793718.1 mRNA downstream 169708 14806527 ~ 14828105 (+) False LOC120554715
XM_039792984.1 mRNA downstream 392019 15028838 ~ 15042444 (+) True LOC120554227
XM_039793021.1 mRNA downstream 424305 15061124 ~ 15070384 (+) True LOC120554245
TU318609 other upstream 470225 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 1589575 13002963 ~ 13025520 (+) False G234425
TU318349 other upstream 1589575 13002963 ~ 13025520 (+) False G234425
TU318345 other upstream 1593107 13002963 ~ 13021988 (+) False G234425
XR_005638294.1 other upstream 1818420 12786641 ~ 12796675 (+) False LOC120554049
TU318853 other downstream 169725 14806544 ~ 14838091 (+) True LOC120554715
TU318854 other downstream 169725 14806544 ~ 14910075 (+) False LOC120554715
unassigned_transcript_1593 other downstream 1293475 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 1294004 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 1296816 15933635 ~ 15933716 (+) True trnas-uga_26

Expression Profile