RNA id: XM_039793628.1


Basic Information

Item Value
RNA id XM_039793628.1
length 1895
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC120554612
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20459974 ~ 20480326 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagaagaagaagaagaagaagaagaattgaCGTCATTTCCTTAATCCCCTGCGCCATGCTAGATGCTAACAGCTTTAGCTAATACCCCAGAGCTCTATTTCCAGACAGGGAAAGAGACCGTTGTGTTGTTGTAGTTTCAGACAGAAGAACCTGTGTTTCTGCCACTCTAACTCACGGAAAGGAGATAGTATTATCCCGGAAGTGAGGGGGGAGAAAGCGTcgtgtttctctgtttgttcttttgttttgcaGTAGGCTAAAGTTAGCTCTGTTAGCTCAGGGTTAGCTTAGCGTTAGCTCTGTCTCTCAGCTGAAATCCACTCTATCATGGACTGACGTCTACAGCTTCCCCCGACAGACCGTGAGGATTAGGGATGCAGCCGGTGGAGAGGGGAGAGGCGACGGTGGATGTGAAGTTCACCGAGCTACCGAGCGCCCTGATAGCCTGTAAAGTCCCGCAGAGTCTGTTCAACGAAGGCGGCGTGAAGACTGTGAAGACAGAACAGAAAGCTTTCTCACAGAAAAGATCCAAAAGGTGTCAGAGTCCAGAGCTGGCTCCCTTCTCGCCCGTCATCCTGGGGAAGTCAACGCTCCTCCGACCCCCCCAGTTTTCCCCGGCCTcggcctcttcctcttcctccctgacGCCCTCGCCACAACCACTCAGGGCGGTTTCAGCGTCCTGGCGTTGCGCCCGTAGTTCGGGTATCAGGTGTAAAAGGTTTTGCCTCCCCGGATCGCCCGGCATGCACATCAAGACCACCAGGTGTAACCGCTTCTGCCTGGTTGCCTCGGTGACCAACCAGGAAGTGTTCAGCCGTCCCGAGGCCCAGgcgGGTTTTGAGTCCTTGTTCCGGTCCTTTGACCCGGCGGTGCAGTTCCAGTACTTCAAGTCGTTCCGGCGAGCGCGGATCAGTTTCAGCGATGCTCCGGCGGCGGCCGAGGCCAGACTCCGCCTCCACAAGACGGACTTCAACGGCAAAGAGATGAGACTGTACTTCGCCCAGTCGGTGCACATCGGGAGTCCTCGGCTGATGCCTCCTAAACCAGATAAACAGTTTCTGATCTCTCCGCCGGCGTCGCCGCCCGTCGGCTGGGAGCAGTCCAACGACGCCATGCCCGTCATCAACTATGACCTGCTGTGTGCCATCTCCAAGCTCGGACCAGGGGAACAGTACGAGCTGCAAACGGCCACGCCCACCACGCCGAGTGTCGTCGTCCACATCTGCGAGGACGAGCGCGGCGGCGACACCTCCACCCCTGACGACAGCGACCCCGACGACCAGCCCCGCCCCCTGCGGCCGCGGATCATCCAGACGCGGCGGCCGGACTTTGGAGACGATCAGTGAGCGCCGCCGCCATCAGGGAGCGGGGGCGGAGACATTCATCCTGACGGACGGAGAGTGGGAAACGCTCTGGGAGCCCGCGGTGTCTCGGAGACCAAACATTTCATATCGAGAAAAGTTAGAGACCGACGCTGCGTTCACAAACCGGGGGAAAGAGCGGAGGTATGAACTTCGTAGAAGACAACACGGTTGTGTTTAACCTTCAGATGATTCAAGGATAAATTGTTTAATTAgttgaaaatctgcagaaaatATGGAGAAGATTCTGCTAAAATCTGGGGAAAATTCTGTTAAAATATGGGGAAAATGCAGCTGAAAATGCGTTCGCAGATTGTGTTTCCCTGCTGATGAAATAATACGAGACAGAACTGAAGGAAGTATTAGTTTTGAAATGTAGAAAATAATGTAAAGTGTAATGTTGTGATTGTAGTTTTTAGGTAAAATGGTGCTGGAGTGTATTTAGAATTGTGTCatgactttgtgtttgtgtttgtgagacGCTCAGctgcaaaaaacaataaaataaagtctGTACAAGAGCATCAAA

Function

GO: NA

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320541 lncRNA upstream 53648 20383386 ~ 20406326 (+) False cd99
TU320544 lncRNA upstream 79477 20378425 ~ 20380497 (+) True G236268
TU320543 lncRNA upstream 82234 20375595 ~ 20377740 (+) False LOC120554192
TU320532 lncRNA upstream 125004 20334361 ~ 20334970 (+) True G236260
TU320530 lncRNA upstream 161334 20298376 ~ 20298640 (+) True G236258
TU320582 lncRNA downstream 27828 20508154 ~ 20511076 (+) False LOC120554724
TU320596 lncRNA downstream 31348 20511674 ~ 20511988 (+) True G236304
TU320604 lncRNA downstream 77566 20557892 ~ 20558095 (+) True G236312
TU320605 lncRNA downstream 77929 20558255 ~ 20558599 (+) True G236313
TU320617 lncRNA downstream 153552 20633878 ~ 20635845 (+) False LOC120554627
XM_039792555.1 mRNA upstream 40856 20409012 ~ 20419118 (+) True gyg2
XM_039792920.1 mRNA upstream 53648 20383321 ~ 20406326 (+) True cd99
XM_039792922.1 mRNA upstream 62595 20383318 ~ 20397379 (+) False cd99
XM_039792914.1 mRNA upstream 84374 20355302 ~ 20375600 (+) True LOC120554192
XM_039792915.1 mRNA upstream 86107 20355302 ~ 20373867 (+) False LOC120554192
XM_039793731.1 mRNA downstream 7341 20487667 ~ 20509914 (+) True LOC120554724
XM_039793639.1 mRNA downstream 114769 20595095 ~ 20635922 (+) True LOC120554627
XM_039792556.1 mRNA downstream 212634 20692960 ~ 20694611 (+) True LOC120554008
XM_039792557.1 mRNA downstream 226066 20706392 ~ 20707535 (+) True LOC120554009
XM_039793231.1 mRNA downstream 321941 20802267 ~ 20832663 (+) True fmnl2b
TU320542 other upstream 62655 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 226179 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 462307 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2278162 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 2288020 18167286 ~ 18171954 (+) True G235775
XR_005638570.1 other downstream 7341 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 335410 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 432329 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 822000 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 927601 21407927 ~ 21422915 (+) False G236461

Expression Profile