RNA id: XM_039793633.1


Basic Information

Item Value
RNA id XM_039793633.1
length 959
RNA type mRNA
GC content 0.52
exon number 6
gene id fam207a
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20312524 ~ 20341903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGGTGGTTATTGTCGCTGACTTGACAGCAGGACACCACGCGCttttgacacatacacacacaaacacacacacaacgttactttgtttcactttactacAAATTTGCTATATATGCATTAGTCTGAGTTTAAAGGGTTTCAACATGGTGGGAAAGATAAAACATGTCCGACAGAAGCTTCACCAAGAGGCGGTGCGCCCCGGCTCCgggttagcattagcatcatCGCTAACGGAGCTGACGGCTGTTTCTGCTCCAATACTCCGGCAACAACAGCACAACAACAGGAGAGACACACAGGCTCCGGTGGAGAGCTGCTTCCCCTCGGGGATCTTCGCCGGCACAAAGATAACTCTGGACGCTCTGCGACAAAGTCTCCAGTGTGACGAAAAAGCTCCACATGTTCCCTCCGCTGCAGAGAAAGGTCCAGAAGAGAAGAAAGttaagacaaagaaagagaagatgaaggagaggagagacagatggCTCAACAAGATGAGCTCCATCAAACAGTTAAAGGAGCAGCAGTTGGCGGCGGTGCGGCGCCAGCAGACGCCCGTGGTTGGCGACATGCGGCCACTGGCCGACGCGCTGCCAGAACTCTGTCAGCTGATTGCCCCTGTCGCCGCCGGCAACACCCCCTCTGCTCGCCGCAAGAGCAGGAAGAACAGAGTACCGGTGAAGAGGCCGGAGCCCACAGACTTCAGTCAGATGAAACAGTCCCAGAAACGCAAACTCCTagaaaCGGAGAGCGTGCGGTTCGGCAGCGCCGTGAAGACACTCTCGGCCAAAATGAATCCTCTGGCAGATATCGGCGAGCAGCTGAGGAAGAAGATgagggaggaagaagagtacgctaacggctaacagctaacagggAAACATCTGGCGGTTTAAAGGAGGAAAGACTGTAAATGTTTCCTCTTCTGTAATAAACCACACAACATTTAACACTGA

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0043170 macromolecule metabolic process biological_process

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320530 lncRNA upstream 13884 20298376 ~ 20298640 (+) True G236258
XR_005638292.1 lncRNA upstream 27626 20283156 ~ 20284898 (+) True LOC120554047
XR_005638293.1 lncRNA upstream 27626 20283156 ~ 20284898 (+) False LOC120554047
TU320469 lncRNA upstream 104588 20207730 ~ 20207936 (+) True G236199
TU320466 lncRNA upstream 126644 20185653 ~ 20185880 (+) True G236196
TU320543 lncRNA downstream 33692 20375595 ~ 20377740 (+) False LOC120554192
TU320544 lncRNA downstream 36522 20378425 ~ 20380497 (+) True G236268
TU320541 lncRNA downstream 41483 20383386 ~ 20406326 (+) False cd99
TU320582 lncRNA downstream 166251 20508154 ~ 20511076 (+) False LOC120554724
TU320596 lncRNA downstream 169771 20511674 ~ 20511988 (+) True G236304
XM_039793657.1 mRNA upstream 41228 20258343 ~ 20271296 (+) True mxra5a
XM_039793186.1 mRNA upstream 77672 20208331 ~ 20234852 (+) True prkx
XM_039792602.1 mRNA upstream 277795 20029026 ~ 20034729 (+) True LOC120554034
XM_039793626.1 mRNA upstream 325795 19897092 ~ 19986729 (+) True nlgn4xa
XM_039793627.1 mRNA upstream 325795 19897096 ~ 19986729 (+) False nlgn4xa
XM_039792914.1 mRNA downstream 13399 20355302 ~ 20375600 (+) True LOC120554192
XM_039792915.1 mRNA downstream 13399 20355302 ~ 20373867 (+) False LOC120554192
XM_039792922.1 mRNA downstream 41415 20383318 ~ 20397379 (+) False cd99
XM_039792920.1 mRNA downstream 41418 20383321 ~ 20406326 (+) True cd99
XM_039792555.1 mRNA downstream 67109 20409012 ~ 20419118 (+) True gyg2
XR_005638373.1 other upstream 78729 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 314857 19996799 ~ 19997667 (+) True G236162
TU319969 other upstream 2130712 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 2140570 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 2351962 17953139 ~ 17960562 (+) True LOC120554216
TU320542 other downstream 41483 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 145764 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 473833 20815736 ~ 20821724 (+) False fmnl2b
TU320732 other downstream 570752 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 960423 21302326 ~ 21361235 (+) False G236467

Expression Profile