RNA id: XM_039793634.1


Basic Information

Item Value
RNA id XM_039793634.1
length 770
RNA type mRNA
GC content 0.54
exon number 4
gene id ebpl
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20887969 ~ 20889752 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAGATTTTGGTGCTTTTGTCTCAATGTTATTTacccttcttctttttcttcttcttcttcttctgtgtgcaCGGCCGGCCGATGGCCACCCCGCCCCACCCAGGCCTGTCTCTGGTGTCCGTGCTATCTCTGATAGCATGTAGCGGCCAGCTGTTAGCCGCGGTGCTGCTAGCACGTTGCTACGGCGGGCGTAGCTCGGCAACGGACCGCTGGGTCCTCTGCTGGCTCTTCTATGATGTCATCGTCCACCTGACTCTGgaaGGACCATTTGTCTACATGTCTCTTGTTGGGACCGTGGAGACGTCTGAAGGACCTCTGGCTGAACTCTGGAAGGAGTACGGGACAGCAGACAGCCGCTGGCTGGTTTCTGATCCCACCATCGTCTCCAAGGAGATCCATACGGTCGGCCTCGGCTCTCTGCTAGGAGTACTTCTGATACACGCAGTACTACGGGATAAATACTACAACtaacatgtacactTCCTGCAGGTGTATCTGAGCGTGGGCGAGCTGTACGGTGGCTGGATGACCTTTgctcctgattggctgcagggcaGTCCTCACCTGGACACCACTTCCTGTCTCCACCTGTGGCTCTACCTGGTCTTCTTTAACGGGGTCTGGGTCCTGGTCcctgtgctgctgctggtcCAGTCCTGGCTCGCTCTCAGGAGTCTGCACGCACTCAGTACGCACTTAGtactacaaccaatcagagcaacagatagacatacaaccaatcagagaaacagatagacctacaaccaa

Function

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047750 cholestenol delta-isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320681 lncRNA upstream 600 20845648 ~ 20887369 (+) False cavin2b
TU320684 lncRNA upstream 8999 20878290 ~ 20878970 (+) True G236359
TU320710 lncRNA upstream 14356 20870666 ~ 20873613 (+) False G236378
TU320709 lncRNA upstream 14356 20872282 ~ 20873613 (+) True G236378
TU320711 lncRNA upstream 14839 20870846 ~ 20873130 (+) True G236379
TU320715 lncRNA downstream 3167 20892919 ~ 20920763 (+) True G236383
TU320723 lncRNA downstream 9266 20899018 ~ 20941457 (+) True G236387
TU320724 lncRNA downstream 11234 20900986 ~ 20931759 (+) False G236388
TU320726 lncRNA downstream 11234 20900986 ~ 20931759 (+) True G236388
TU320746 lncRNA downstream 67215 20956967 ~ 20957756 (+) False zdbf2
XM_039793203.1 mRNA upstream 1949 20876431 ~ 20886020 (+) True cavin2b
XM_039793231.1 mRNA upstream 55306 20802267 ~ 20832663 (+) True fmnl2b
XM_039792557.1 mRNA upstream 180434 20706392 ~ 20707535 (+) True LOC120554009
XM_039792556.1 mRNA upstream 193358 20692960 ~ 20694611 (+) True LOC120554008
XM_039793639.1 mRNA upstream 252047 20595095 ~ 20635922 (+) True LOC120554627
XM_039793685.1 mRNA downstream 62400 20952152 ~ 20956272 (+) True eef1b2
XM_039793673.1 mRNA downstream 67197 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA downstream 67197 20956949 ~ 20964585 (+) False zdbf2
XM_039792559.1 mRNA downstream 88653 20978405 ~ 21070422 (+) False LOC120554011
XM_039793675.1 mRNA downstream 122742 21012494 ~ 21026525 (+) True LOC120554650
TU320664 other upstream 66245 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 378024 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 490650 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 654174 20208329 ~ 20233795 (+) False prkx
TU320432 other upstream 890302 19996799 ~ 19997667 (+) True G236162
TU320732 other downstream 22903 20912655 ~ 20916777 (+) True G236394
TU320869 other downstream 412574 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 518175 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 518175 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 521060 21410812 ~ 21422915 (+) False G236461

Expression Profile