RNA id: XM_039793650.1


Basic Information

Item Value
RNA id XM_039793650.1
length 6011
RNA type mRNA
GC content 0.56
exon number 43
gene id LOC120554632
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18029836 ~ 18102031 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGTAGACGGAGAGGTCGGTGACAGAGACTtatccctccccccacccccccaacaaGCTGCTGAAGGTGTCCGCCGGAGATGAACACAGCCTCGGAAGGATTTGAACCGATTTTTTCTCCTAAATAACGAACGGTTGAAGGATGCGTGGAGCCGGCAGGTGGTCGGCATGGAGCTCGCGGACGTGCATCCTCCTGCTGATGGTCGTCACACGGACCCTATCCCAGCGCACAGGCATCTCTTTGCTCCAGCTAATCGGAGACCCGCCGCCGGATGAGATCGGCCGCAGCTACGGGCCGGGGGGAGAAACGGCCTACGTCTTCACCCCCGCGGCGGTGTCGGGCCAGCCGGCCCTGGCCCACGTCCCCAACCCTTTCCACCGccacttctctctcctcttccacaTCAAGCCGTCCACCCCCGCGGCCGCCGTCCTTTTCTCCATCACCGATGGGCCCCAGAGGCTCATGTACATCGGCGTCAAGCTCGGCGCGGTGCGCTCCGGCCGCCAGGCGGTGCAGTTCTTCTACACCGAGCCCGACTCGGAGGCTTCGTACCAGGCGGCCAGCTTCCAGGTGCCGAGCCTGGTGGACACCTGGAGTCGCTTCTCGCTCGCCGTCTTCGAGGAGCAGGTGACCTTCTACCTGGGCTGCGACTCGGAGCCGCAGGTGGTGAAGTTTGAGCGTTCGCCGGATCCCATGGAGCTCGACGCGGGCGCCGGGATCTTTGTGGGTCAGGCAGGAGGAGCCGACACTGACAAGTTCCAGggtgAGATTGCAGATCTGAGAGTGGTGGGAAACCCTCGGGCGGCCGAGCGTTTGTGCGACGACGAGGACGACTCTGACGCTGCGTCTGGTGACTTTGGCAGCGGCGACGGCGACCGGAGGCACACAGGAAACATTGTGAAGACCACACCTGCTTCCCTCCGGCCGGTACCTGAACCCCCTCTGATATCCTCAACCGGAAGCAGACTCAAAGAAACAGACGTCAGGTTTCAGCAGCCGCCGGTGGACAGCAGCCGGCCCGGATCGCCGGGCCCGAGAGGTCCCGGCGGCGCTAAAGGGGAGAAAGGCGACAAAGGAGCGAAAGGCTCAGCGGGGGACACGGGCCCCGCAGGGCCGAAGGGAGACTCCGGCTCCAGCGCCGCTTCCTCCGGTTCGTCCTCTCAGGGTGGAGAACGCGGACAGAAGgGAGAAAAAGGTGCAAAGGGTAGTTCTGGCTTCGGATACTCCGGCAATAAAGGAGAACGTGGGGCCCCGGGGCCTCCGGGGCTCCCCGGTCCCCCTGGTCCTGCAGCGGAGGTGGTTCGGCTCGGGGATGGCTCTGTGGTGCAGCAGGTGTCTGGACCCCCCGGACCGCCGGGACCACCTGGGTCAGACGGGGCCCCAGGACCTGCAGGAACCGATGGAGAACCTGGCGATCCAGGAGAGGATGGAAAGGCTGGTCCCGCTGGGCCACGAGGGTTACCAGGAAACGCAGGATCTTCTGGAGCTAAGGGCCAAAAGGGGGAGGTTGGAGAGGGTCAACCCGGACCCAGAGGCCCCCCAGGTCTACCAGGACCGCCCGGACCGGGCACCGGGGACCGGCCCACGTTCTTTGACATGGAGGGCTCGGGATTCCCAGACCTGGACAAAATCCTGGGTGCCCGTGGTCCTCCGGGCCCCCCAGGCCCCCCCGGCCCCCCTGGGGTCTCAGTGGCTCTGGGACCCAACGGTCCCGTAGCGTTCGGACCCCCTGGACCACCAGGACAGGACGGAGTCCCCGGTCTGCCGGGCCCCCCCGGTCCTCCCGGTAAACCGGGTCAACCCGGACTCAGAGGAGAGAAGGGGGACTCTGGTGATCTTGGTCTTCCTGGTGCAGTTGGAGCAAAGCAAACCTCGCAAGACTCCAACTTTTTCACGGGCCTGTTTTCTTACTTTGCTCCATCCTCTACGGGTGCTCAGGGTGATCTAGGACCGCAGGGCACATCGGGGCAGATCGGGCTGGCAGGGCTTCCAGGTCCCATGGGACCAGTTGGACCCCCTGGACCCCCCGGGCCACCGGGGCCACCGTACGGCGTCGGTCATGATGGCTACGAGACGAACAACGGCTGGTCTGGACTCAGTGGCCCACCTGGACCACAGGGTCCAGCTGGTATCCCAGGGCTGCCTGGTAGGGCAGGTTTGCCCGGTAACCATGGAGACAAAGGATCAGAGGGACCAAGAGGACCTCCGGGGATACCCGGTCTCGACGGGCTCACAGGACAGCCGGGTGAAaggggagacagaggagagaaaggagagaggGGTCTGCCAGGGCGAGACGGAGTGCTACCTGGACCTCCAGGGCCTCCTGGACCTCCAGGACAAGTCGTCTACCAGACGAGCGATTATAATGACCTTTATTGGAGCGAAGGGTTGCAGGGAGGAAGTGGCGTTCCGGGTCGACCTGGATTCCCGGGGCCCTCCGGACCAAAAGGAGAAAAGGGAGACTCGGGTCCTCCAGGATATGCACCTAAAGGGGAGAAGGGAGAGCCTGGTATCGTCCTGGGACCTGATGGGAGACCCCAGTACCTCGGTGGTTTGGCAGGACGGACGGGCGATAGTGGACCCCCTGGCCCTGTGGGACCTCCAGGTCCTCATGGTCCCCCCGGCCATAAGGGAGAGATTGGATTTCCAGGTAGACCGGGTCGACCCGGGCTGAACGGCgccagaggagagaagggagaCTCAGGCACTGCATCTGGATCTGGTTACCCTGGTCCTCCAGGTCCACCGGGCCCCCCTGGACCTCCCGGATCCTCTGTTCCCAGCGACAGACTCGGAGGATTGGATTCCAGATATTACCAAGCTCTTAAAGGAGAGAAAGGTGATCGTGGACTACCAGGGACACTTGAAATCCAAGGCGCAGGAGGAACCATTGACATTTACACGTTAAGGAATGAGTTGAAAGGTGAAACGGGCAGCCCGGGCTAcaaaggagagaaaggagaacCGGGCGGAGGATATTACGACCCCCGCTACGGAGGGAGCGGAGTCGGAGCCCCAGGAGTGCCTGGACCTCCTGGTCCAAGAGGCGACTCAATCGTTGGCCCACCCGGCCCCCAGGGGCCACCTGGTCAACCAGGAAGAGGCTACGATGGGCAACCTGGGCCACCGGGGCCGCCTGGACCTCCAGGAGCATCCTTATCTGGAAGTTACAGGGGCACACAGACTATCAATATTCCCGGACCACCGGGACCACCTGGAGTGCCTGGACTACCTGGACAGTCATCAGGGgtgacGGTGTTTAGGTCTTATGACACCATGACAGCCATCGCTAGGAGACAACCTGAGGGCTCTCTGGTGTACATCATTGAGCAAACCGATCTCTACTTACGGGTCCGAGATGGAATTCGTCAAGTCCAGCTTGGCGGCTACATTGCTTTACCCAGTGATGATGGTAATGACGTTGCGGCTGTGGAGCCCCCACCAGTCATCCCCTACTCCCCAGACCACCACTCCAACACCGACACCTCCGCCCACGACTCCCAAAGGCCCCCTGAGAGTCCAGTCCACCCGGGCTCTGGGCATCAGTCACACCCGGACCCTCGATACCCGACGCACCCTGACCCCAGATACCCAACCCACCCTGATCCCCGATACCAACCTGACACGCGGTACCAGCCCGATCCTCGGTTTCCAGCACCCACAGATCCCAGGTTTCCAAGCTACTCCGAACGGGTAAATCAGCCAGACGGTAGGTATTCTGTCCACACGGGACCGGATGCTCGTTACCCGGTCACCCCTCAGCGAAGACCACCTCCTCCCGTGCCCCAGACTCCAGTCCACCATCACACCTCAGGTCCCGGGCTCCACCTGATCGCGCTGAACGTCCCTCAGACGGGCGGGATGCGGGGCATCCGCGGCGCAGACTACCAGTGCTTCACTCAGGCTCAGGCCATCGGGATGAAGGGAACTTTCCGGGCCTTCCTGTCCGCCAAACTCCAAGATCTCCACAGCATCGTCCGCAGGGCCGACCGGGACCGTTTCCCAATAGTCAACCTGAAGGACGAGGTTCTGTTCGACAGCTGGGAAGCCATCTTCAATGGCGGCAGGATGAAGGACAACGTGCCGATCTACTCCTTTGATGGCAAAGACGTTCTCAGTGACGGCACATGGCCAGATAAGATGATGTGGCACGGGTCGACCGGCGGCGGGCAGGCGCACGGCGACAGCTACTGTGAGATGTGGCGCGTGGGTGAGCAGGCGCTGAGCGGCATGGCCTCGTCGCTGCAGAGCGGCAGCCTGCTCCAGCAGAGCTCCAGCAGCTGCTCCAACTCCTACGCCGTGCTGTGCGTCGAGAACAGCTACATCGGCCACGCCaagagatagacacacacatgcacacacaacacatgcttTTGTCCTCACATACTTTTCTATCTATTGTAAATAAGTTTTTTTCTTAGGTATAATTAGttgatgtttgtttatgttggtGCTACACAGGACGAAACCACATGTTGGACCTAAATTAAGCTCAGGTGACGTACAGCAAAGGGCCGTCCACACCGAGATCGATGACTGTAAGCATAACTaatggattctgattggctgtcagtgttTCTATTGTTCATCAAATCGCTCTGAAAGTGATCCCAACGATACCGTTCGCCACTGTCGTTGCCGTTATAGTTGTGGTGTGGACTCCGCCATCCACTGGAGTTGCAACGATTTTTGAAAACTATTTGTTTATAGTTATCGTTTTTTGGTGTGGATGGCCCTTAACGCAGGCAACGGTGTGTTTCCAAAAGGGCCGTTTTGTTGTCTGTGAATGGGTCATGTATTTGTTGTTTGGGACTCGTCAGCTCATGTGTCGCTATAATGTTGATATGGATATTAAATTAGTACGCTTGGTGCTGGTTGGTAAAGCCCAGTTTAATTGAGAGGCGTTGGGATTCAGaaacaatgactacgtttacatgcacataatattcagttttttgcccttatttcGGAAAAGACGACATTCCAACTAAGTTGTTTCCACGTCTAacgaaagtgaatattccactaatatggGAAAAATGTGTCATCATCAATTTCTGCCGCTGACACGCTTTATGGAAAGGATAGGCCTTTTACAAAAGTCTAAAACCCTCTTTGTTTAAGCAGAAACAGCTTTAGCTAACTCCATTTAAATTAACAGCAtatttagcgtgtatagagccaacacatGTTCACATGtcaatcggtaaactatgtctttatttcaaccaaagctgagttgtgatggttggaaaaatGGAAAGTGgaccaaaacggcttttcataataataataataaatattgaaaaatacaTAATTGTATTGATGCAGTCATCAACACATTTCAGCACCCAAGAGCAGGATTAACACAAGTTATTGTATATgaaatgtatgtttgttttttttaaacttgttttCCTTTACACTGATGTAATCTGTAACCCACAGCACTTGAGTAAtagctttttatttcattttgcgACTTTCATACATGGGAAGATGTTTTCAAATCGTATTTTTATCAGTAACAAagggatatttattttgtataaacCGTGCATTTTCTAGTATAATGTGTGATGTGAATGCTTTCACAAAGAATAATATTTCCAAATGTATCCAGCAAATGTGCAAAGCCTACACAAAGATGTGTAATCCTTGAAAAAACGTTTTCTTTTGACATAACGTTTGTGCACATAGCAAGCAAACCCATTTCTGTACAGATATCTGGATAGGATTCAGCCATAAGTGTGTCTGTGCACtgttgctttttatttgtttttgcgtTTTATCCAAGAACAGTAAATGCACCGCAGCTAGCTTACAGTGGAGAGCATACAAAACACTGGGGTCACACGGTCTCGGTCTAAAATGGAGTATATAGTGACATTTCATGTGCCATAACAAATGCAGCAAGATTTGTGTTATCTGTTTTTCTCCTTGTGCGAGCAACATTTTTGAAATGTTGCATCTCATTGAATAAACCTGTGTGGAACATTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319927 lncRNA downstream 43658 17985922 ~ 17986178 (-) True G235743
TU319909 lncRNA downstream 86339 17943210 ~ 17943497 (-) True G235725
TU319904 lncRNA downstream 89509 17934775 ~ 17940327 (-) True G235724
TU319906 lncRNA downstream 89564 17939114 ~ 17940272 (-) False G235724
TU319903 lncRNA downstream 98851 17930532 ~ 17930985 (-) True G235723
TU319995 lncRNA upstream 8305 18110336 ~ 18113957 (-) True G235793
TU320026 lncRNA upstream 108472 18210503 ~ 18214168 (-) True G235816
TU320056 lncRNA upstream 150793 18252824 ~ 18300953 (-) True G235844
XR_005638536.1 lncRNA upstream 154912 18256943 ~ 18257506 (-) True LOC120554613
TU320063 lncRNA upstream 169047 18271078 ~ 18276814 (-) False LOC120554370
XM_039793053.1 mRNA downstream 56659 17971201 ~ 17973177 (-) True LOC120554265
XM_039793055.1 mRNA downstream 60433 17967966 ~ 17969403 (-) True LOC120554266
XM_039793040.1 mRNA downstream 62027 17966724 ~ 17967809 (-) True LOC120554256
XM_039792549.1 mRNA downstream 151948 17862318 ~ 17877888 (-) True LOC120554000
XM_039793056.1 mRNA downstream 284579 17734758 ~ 17745257 (-) False s100b
XM_039793726.1 mRNA upstream 11964 18113995 ~ 18143453 (-) True abi2b
XM_039793724.1 mRNA upstream 11964 18113995 ~ 18143451 (-) False abi2b
XM_039793725.1 mRNA upstream 11965 18113996 ~ 18143451 (-) False abi2b
XM_039793723.1 mRNA upstream 11965 18113996 ~ 18143451 (-) False abi2b
XM_039793727.1 mRNA upstream 41946 18143977 ~ 18158300 (-) True LOC120554721
TU319844 other downstream 284636 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 926319 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 1121418 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 1122014 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 1122351 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 1629288 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2265310 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2624372 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2624499 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 2658677 20760708 ~ 20760992 (-) True G236349

Expression Profile