RNA id: XM_039793664.1


Basic Information

Item Value
RNA id XM_039793664.1
length 2168
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC120554642
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21027052 ~ 21047316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCAGATGTTCCAACAGGAACACACCCCCGAGTTTCCAGGAGCCGCGTGAACTCCAGTGTGGACAGACCCTCATCGACATACAACAAAATGTGAGTCAACGGCAATGACAACAGACTCAGGGAAGAGATACCTGAATAATGTGTTCCTCTCTCAGCTGAACGGCTCGGCAGATTTAGAGACGCTGGCGGCGAGCGCTCAGATGCTGACGTCCCAACCTGAAAATCTGACGGCTGAAGAAGTGACGACGGCCGCTCAGATCGCCGACACGCTGCTGTCGTCTGAGAACGTCTCACAGAGCGTGAGGGAGGCAGCTGTAGCGACCGTCAGCCAGATTCTGAACACCAACCCTCCAGACAACATCCAGGAAAACAACGCTACTCTCAGGCTGACGCAGACCCTGTCCAGCCTGTCGGTGGACCTGAGTCTGATCTCCAATGATTCTAAGTTGGTTCAGCCAAACATCGTGGTCCAGTCGGCTCAGATCTCGGCGGCCGACACTCAGGGAGTCCAGTTCACTGCGCTGTCAGGAACGTCGGGAAGTTTCGTTGCCGACCGCATCCAGCTGGACACCAACACGTCGGCCATCGCCGTGGAAACCGGCTTCATTGCAGACGCCGTCGTTTACCTCCAGTTCCCCCCAGgtGGTGCTGCCGGCCGTCTCCAGACTCCGTCCAACGTATCTGTGGGTTTCGTCCTCTACCAGAACGACCACTTCTTCCACTCGCGGCGCTACAGGCGGCGCCGGGCCTCCGTCAGGGTCCTGTCGGCCAACGTCAGCGGTCTGGAGCCACAACAGGTCCAGATGCTCTTCAGACCAATGCTTCTGAACGGTACGTCTCTGTGGGACTTCTCGTGTGTTTTTTGGAACTACACTTTGGAGGATTGGAGCGCGGCTGGCTGCTGGAAGGGAAACCATTCAGATGGAGTCCTCCGATGTTTCTGCAACCACACAACCAACTTCGCTGCTCTCTGGtccTTCAGAGAGAATTATGAATATGCAGAAGTGCTGGATACATTTTCTATAGTTGGactttctttctccatcctGGGTTTGGTTGTTACGATAATTCACCACATTACAGACAACTTTAAGAGAAACAGTGGCGACTGGAAGAACTACAGGAACTCCCAGCTTGCTTTGCTGAGTACATGTTTCAGCCTGCTGGCCTTCATCATCACCTTCCTCTCTGGCGTCACAAACCGGCGACAGGACGCTGGCGAAGACGACGCGTTGCTCGACACCGAGACCAACGGCGTTCTGGACTCTGACGAATATGTGGCGGCGGACAGCGGCCCATGTTCGGGGGTGACGGCGCTGCTTCACTTCTTCCTGTTAGCTACGTTCATGTGGAACAGCATGTACGCCACACAGCTGGTGCTGCTCGTCCGCAAGATGCGCCAGAACCTGCCGCCATACTGGACGCCGCTCAGCGCCACCGTGGGATGGGGAGTCCCAGCTGTCGTCATGGCGATTACACTGGGAATTGCCTACAGGGTGGACGACCCTTTAGGATATAGACAGGAGgaattTTGCTGGCTGGCAGCGCTGGATAAATCCAAAGACTTTGACTTTGGGAAGCCGatgttttggggttttctgCTTCCTATCGGTTTGATTCTGATCTACAACATCGTTCTGTTGGTTCTGGTCTCTCAGACCACCTGCAGGACCGACCCCACCCTCACaagCAGTAATCCTCGGTCCGTGTGGAGGAACTTTCTGATCAGTTTCTCTCTGGCTGTGTTACTCGGTTTGTCCTGGACCCTGGGTTACCTGGTGCTGGTTACCACGGGATACGCCCACCTGGTGCTCAGCATCCTCTTCTGCCTCTGCACCACCACACAGGGGCTCCAGATATTCGTCCTGTTCACCGCCAGAAAGCCGAGCTTCAGAGCTGGCGTGTTGCAAGTGGTTCATACCATCTCGTCTGTCAACATCCAActcagagagttttcatataaTCTGCTGAGAGAATGGACTCACTCTACTGAGTCCTACAGAGAGCTGACAGTCTAGagacttttttttgggggggggggaacgaCACGGAGGAACCAGTTGCAGCAATTTCTGTCACACAATATATGACTATTGTtatgaaaatatgtattttttccCTTAAAATATGaaacttttattctgaaaatattttttattttttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320761 lncRNA upstream 48686 20980566 ~ 20988411 (+) False G236413
TU320759 lncRNA upstream 48686 20981110 ~ 20988411 (+) False G236413
TU320760 lncRNA upstream 48686 20981110 ~ 20988411 (+) True G236413
TU320763 lncRNA upstream 48686 20981110 ~ 20988411 (+) False G236413
TU320752 lncRNA upstream 58644 20976072 ~ 20978453 (+) False LOC120554011
TU320794 lncRNA downstream 105097 21152413 ~ 21233973 (+) True G236440
TU320802 lncRNA downstream 146287 21193603 ~ 21247124 (+) False G236446
TU320805 lncRNA downstream 150109 21197425 ~ 21203222 (+) False G236448
TU320806 lncRNA downstream 150109 21197425 ~ 21202606 (+) False G236448
TU320808 lncRNA downstream 150109 21197425 ~ 21203222 (+) False G236448
XM_039793675.1 mRNA upstream 10572 21012494 ~ 21026525 (+) True LOC120554650
XM_039793673.1 mRNA upstream 72512 20956949 ~ 20964585 (+) True zdbf2
XM_039793674.1 mRNA upstream 72512 20956949 ~ 20964585 (+) False zdbf2
XM_039793685.1 mRNA upstream 80825 20952152 ~ 20956272 (+) True eef1b2
XM_039793634.1 mRNA upstream 147345 20887969 ~ 20889752 (+) True ebpl
XM_039793667.1 mRNA downstream 2198 21049514 ~ 21063917 (+) True LOC120554645
XM_039793669.1 mRNA downstream 2198 21049514 ~ 21063917 (+) False LOC120554645
XM_039793668.1 mRNA downstream 2198 21049514 ~ 21063917 (+) False LOC120554645
XM_039793676.1 mRNA downstream 51267 21098583 ~ 21120770 (+) True LOC120554651
XM_039792560.1 mRNA downstream 110645 21157961 ~ 21165554 (+) True LOC120554012
TU320732 other upstream 120320 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 215373 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 527152 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 639778 20383386 ~ 20397319 (+) False cd99
XR_005638373.1 other upstream 803302 20208329 ~ 20233795 (+) False prkx
TU320869 other downstream 255010 21302326 ~ 21361235 (+) False G236467
TU320853 other downstream 360611 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 360611 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 363496 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 366921 21414237 ~ 21422915 (+) False G236461

Expression Profile