RNA id: XM_039793677.1


Basic Information

Item Value
RNA id XM_039793677.1
length 2214
RNA type mRNA
GC content 0.55
exon number 17
gene id dytn
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20965938 ~ 21075255 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCAGCAGACGTGATGACGCGCACCTGGACGTAATCAGTCCCAGAAGGTAAACAGCAGCAGAGCGGCGAACCATCACGTCATAGTGTGTTGTGTTTCCAGCATCTTTCAGGTCACAGATGATCCAGCAGAGGGCAGTGTACCGCCttctgtctgctgctgctgccttcaAGTCCGTCAGGAAACATCACATCCATGTTTCACTCAgGTGTGATGTGTGAGTGATGTCAGCTCTCTGCCAGCTGCTGATTGGTCCacagacagcagatgatgaaaacTGAAACCTTCATTCATAATTCAGGAGCTGCAGTTTGTCTCTTAAACTCAGACAGGCTGACGACCTCAACATGGAGTCAGACAGCCCCGaaGGTGAGACCTGTCTCAGTGTCTCCAGAGTCTCCGTGAAGCTCCTGTCTCTACAGAGACTCTGTCACCtggacGTGGTGTATGTTCGCCACATCACAGCGGCCTTCCTCCCGCAGCAGGAAGTGAGGCTGGACAGACAGGAAGTGAGCCAGACTCTGAACAGGATGTTCCACAGCGTCTCACAGGAAGTAGAAGGTCATGTGACCGAAGAGGCCGCCGAGGAGACGTGCGTTCTGATGTTCACTCTCTACGACCGgggtCAGTCTGGTTTTATTTCGGCTGCTTCTCTTCAGACGGCTCTGATTTCTCTCTCAACTGAAACTCCTCTGCTCAAATACACAGctctGCTGAGTGTTGCAGAGGACGGTTCAGGGTCAGTCAGCCGCTCTGGACTCAGATCTCTACTGCAGGACCTCAGCCTGgtggtcCAGGAGGACAGCAGAGTATTTGGAAGCGTGGAGGCGGCGCTGACCTCGTGTTTTAACAAGGTGACGTCGCCCACGGCGACCGTGGGACATGTGTTGTCATGGCTGCGGAGCGAACCGCGcctgttgctatggttaccgGCTCTTCACCGCCTGTCCGTCAGTCAGAACGTCCGGCACGCCGTCCGCTGCCACGCCTGCAAGATCCGACCAATCACAGGCCTCCGgtACCGCTGTATGAAGTGTGTGAACATCCAGATGTGTCAGAGCTGTTTCCTGACCGACAAACACAAAACTCACCATCCTATCAGAGAGCTCCTCACACAGCCGACCTGGAGAGAGTCTCTGTCCTCGTTCGTGCACACCGCCCGTCACCGCCTGTTGCCGCGGCGACCCAGGAAGAGGGCAGGGTCAGAGACTCAGGACAGAGATGTTTCCCATGATGCATCACTGCGAGATGTTTCCCATGATGCATCGCTGCGAGATGTTTCCCATGATGCATCGCTGCGAGATGATTCCCATGATGCAACGCTGCGACCACCATCCTGCTCGTCCATAGCTCTGCAGACAGATGATGTGACGCCGCCGCAGcTGCAGGCGTCCGTTCTGATGACTGAAGTCAGaaacctgcagagagacagatggctgatggagcagcagctgcaggcgtTTCGGCTCACCGTCCAATCAGAGCAGGGCATCCTGGAGGACAGGTGCTCGGACATGGAGGTTACCATGGAAACGCTGAGAGAACACAACATCCGTCTACAGCGAACCCTCtctcagGCTCTGAACAAGATGGAGGCTCAACATCACGCCGACAACACGCCACAGAGCACCAACACGGTGACCATGGCGACCACGGAGGACACGGTGACCATGGCTACCACGGAGGACACGGTGACCATGGCTACCACGCAGAGAGAAACCTTCACGCTGACTTCAGACTCtgagagaaacacagaagaagaagaagagtttcTGAAGACAGAGGACGAGTGGAGCGAGGAAGAACTACAAACTCCATCTCCCACGATGCACCGGGACGTGTCTCCGTCACATGACTCCCCCtgtggagaggaagagggggcGGAGCTACAGGCAGAAGGGGTGGAGCTACAGGAAGGAGAGGACAGCAGCTGTGTGGCTGAAGCAGAGGATTCTGGGACATGGAGTCTAGAGGAGCTGCTGCACGAGACCGTGGAGACACTGAAGACagagctgcagacagacagaaggacagagagacagacagGTGGGAGGAAGGGGGCGGAGCTTCTGCAGGCGGCCAATCAGGTGGGAGACTCTCTTCACTGGCTGGCGGTCGCCGTgacaacagacacacagtttGGGTTATAAAAAGCGTTTATTGTCACCATGGATACTTAAATACAGAcggtaaataataaaataattcatCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638545.1 lncRNA downstream 38782 20920580 ~ 20927156 (-) True LOC120554667
TU321063 lncRNA downstream 55927 20906215 ~ 20910011 (-) False LOC120554644
TU321093 lncRNA downstream 69806 20894240 ~ 20896132 (-) True G236649
TU320971 lncRNA downstream 79662 20883265 ~ 20886276 (-) True G236558
TU320979 lncRNA downstream 83757 20880919 ~ 20882181 (-) True G236559
XR_005638557.1 lncRNA upstream 94540 21169795 ~ 21183925 (-) True LOC120554677
TU321157 lncRNA upstream 116464 21191719 ~ 21199247 (-) True LOC120554675
XR_005638555.1 lncRNA upstream 116575 21191830 ~ 21199214 (-) False LOC120554675
TU321164 lncRNA upstream 118337 21193592 ~ 21247076 (-) True G236692
TU321166 lncRNA upstream 118742 21193997 ~ 21213372 (-) True G236693
XM_039793686.1 mRNA downstream 14073 20940988 ~ 20951865 (-) True arl11
XM_039793665.1 mRNA downstream 45440 20892914 ~ 20920498 (-) True LOC120554644
XM_039793201.1 mRNA downstream 98138 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA downstream 98138 20854791 ~ 20867800 (-) False vps16
XM_039792558.1 mRNA downstream 115474 20845301 ~ 20850464 (-) True rgn
XM_039793658.1 mRNA upstream 51639 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA upstream 51639 21126894 ~ 21145155 (-) False LOC120554641
XM_039792561.1 mRNA upstream 126619 21201874 ~ 21242177 (-) True LOC120554013
XM_039792562.1 mRNA upstream 225026 21300281 ~ 21557021 (-) True LOC120554014
XM_039792563.1 mRNA upstream 566583 21641838 ~ 21651918 (-) False LOC120554015
TU320995 other downstream 14258 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 102627 20862680 ~ 20863311 (-) True G236646
TU321084 other downstream 112555 20843492 ~ 20853383 (-) False rgn
TU321138 other upstream 126660 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 463247 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 559593 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 598437 21673692 ~ 21674838 (-) True G236611

Expression Profile