RNA id: XM_039793680.1


Basic Information

Item Value
RNA id XM_039793680.1
length 1822
RNA type mRNA
GC content 0.59
exon number 14
gene id ftcd
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20990890 ~ 21003269 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGGCTGGACTTTGAGCATTAGTTTGGTGTCTCTTCCTTCAGTCTACAGACGACATCATGGCTCAGCTGGTGGAGTGCGTCCCAAACTTCTCCGAGGGCCGAAACAAAGAGgtgatCGATGCGATCTCATTGGCTATCTCCGAGTCCCCCGGCTGCAGCCTGCTGGACGTGGACGCCGGAGCGTCCACCAACCGGACGGTGTTCACCTTCGTGGGCTCGCCGGCCGCCGTGGTGGAGGGGGCCCTGAACGCAGCACGCATCGCCTTCAGCCGCATCGACATGGCAACGCACTCAGGTGAGCATCCTCGGACCGGAGCGCTGGACGTGTGTCCCTTCATCCCCGTCCAGAACGTCTCCATGGACGACTGCGTCCGCTGCGCCGAGACCTTCGGACAGAGACTGGCCGAGATGCTGCACGTCCCCGTGTATCTGTACGGAGAAGCAGCGCGGAGAGAAACCAGGAGAAATCTCCCGTCTGTCCGAGCCGGAGAGTACGAAGCTTTACCTGACAAGTTGAAGCTTGCTGATTGGTCCCCTGACTTCGGCCCGGCGGAGTTCGTGCCATCGTGGGGTGCCACGGTAACCGGCGCTCGTAAGTTCCTGATCGCCTTCAACGTGAACGTGATCGGCACCAAGGAGCAGGCGCACCGCATCGCGCTGGACGTCCGGGAGCAGGGCCGCGGCAAGACACAGcCGGGGCGTCTGAAGAAGGTGCAGGGGATGGGCTGGTACCTGGACGAGTCCAACATGGCCCAGGTGTCCACCAACATCCTGGACTACGAGCTGACCCCCCTCCACACGGTGCACCAGGAGATCTGCAGCGTTgcaaagGAGCTGAAGCTGCCAGTTGTGGGCTCTCAGATCGTGGGTCTGATTCCTCTGAAAGCCGTCCTGGACTCGGCCGACTTCTTCATCCAGAGAGACGGGCTCTTCATCCTGGAAGAGGAGCACAAAGTCCGCCTGGTGATCAGTAAACTGGGCCTGGACTCTCTCGGCCCGTTCAACCCCAAGGACAGAATCATAGAGTACATGGTGCAGTCTGGGGACGACAGCCGtctggtgtctctctctctgcagcagttTGTTCAGAGCGTCGGCGCTCGCACGGCAGCTCCCGGCGGAGGATCGGTTTCTGCTGCCGTCGCTGCTATGggCGCGGCGCTGGGCGCCATGGTGGGTCAGATGACCTACGGGAAGCGCCAGTTTGACCATCTGGACGGAGTGATGCGGCGCCTGATTCCTCCGTTCCACCAGGCGGCGAAGGAGCTCCTGGACATGGTGGACGCCGACTCCACCGCCTTCAACAGCTACATGGCGGCGCTGAAGATGCCGAAGACCTCAGCAGAGGAAATAAAGAGGAGAGAGGTGATGATGCAGGCTGGTCTGCAGCGAGCGGTCAGCGTGCCGTTGGCTCTGGCCGAGAGGGTCAACGTCCTCTGGGCGCCGCTTAAAGAAATGGTCGTCAACGGCAACATCGCCTGCAAGTCGGACgctcagGTGGCGGCGAAAGCGTTGGAGACGGCGGTGTTCGGGGCGTATTACAACGTCACCATCAACCTCAACGACATCACAGACCAAGACTTCAAGATGGCCaCTGAGAAACGAGTGGCAGCGTTGCTGCAGGAAGCGAAGGAGAGCGCCGCTGCCGTCCTGCTCGCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGACcagaggaagtgatgtcatcTTCTTCAGCGTTGAACTTCTGACcctgtgattggatgtaaacaaaaaaaaattaaaaacacattttcatta

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005542 folic acid binding molecular_function

KEGG:

id description
K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321103 lncRNA downstream 1090 20988518 ~ 20989800 (-) True G236659
TU321104 lncRNA downstream 1090 20988518 ~ 20989800 (-) False G236659
TU321058 lncRNA downstream 2416 20958314 ~ 20988474 (-) True G236624
XR_005638545.1 lncRNA downstream 63734 20920580 ~ 20927156 (-) True LOC120554667
TU321063 lncRNA downstream 80879 20906215 ~ 20910011 (-) False LOC120554644
TU321108 lncRNA upstream 26668 21029937 ~ 21030262 (-) True G236662
TU321122 lncRNA upstream 48238 21051507 ~ 21052073 (-) True G236673
TU320999 lncRNA upstream 66047 21069316 ~ 21077796 (-) False G236572
TU321000 lncRNA upstream 66047 21069316 ~ 21077796 (-) True G236572
XR_005638557.1 lncRNA upstream 166526 21169795 ~ 21183925 (-) True LOC120554677
XM_039793686.1 mRNA downstream 39025 20940988 ~ 20951865 (-) True arl11
XM_039793665.1 mRNA downstream 70392 20892914 ~ 20920498 (-) True LOC120554644
XM_039793201.1 mRNA downstream 123090 20853565 ~ 20867800 (-) True vps16
XM_039793202.1 mRNA downstream 123090 20854791 ~ 20867800 (-) False vps16
XM_039792558.1 mRNA downstream 140426 20845301 ~ 20850464 (-) True rgn
XM_039793658.1 mRNA upstream 123625 21126894 ~ 21149363 (-) True LOC120554641
XM_039793659.1 mRNA upstream 123625 21126894 ~ 21145155 (-) False LOC120554641
XM_039792561.1 mRNA upstream 198605 21201874 ~ 21242177 (-) True LOC120554013
XM_039792562.1 mRNA upstream 297012 21300281 ~ 21557021 (-) True LOC120554014
XM_039792563.1 mRNA upstream 638569 21641838 ~ 21651918 (-) False LOC120554015
TU320995 other downstream 39210 20941019 ~ 20951680 (-) False arl11
TU321090 other downstream 127579 20862680 ~ 20863311 (-) True G236646
TU321084 other downstream 137507 20843492 ~ 20853383 (-) False rgn
TU321138 other upstream 198646 21201915 ~ 21206810 (-) False LOC120554013
TU321003 other upstream 535233 21538502 ~ 21556981 (-) False LOC120554014
TU321228 other upstream 631579 21634848 ~ 21651877 (-) True LOC120554015
TU321045 other upstream 670423 21673692 ~ 21674838 (-) True G236611

Expression Profile