RNA id: XM_039793684.1


Basic Information

Item Value
RNA id XM_039793684.1
length 1545
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC120554659
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21603492 ~ 21605036 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccagttcacatttccattcaccttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtggaacttgttcatttgttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagagttcccggtcgtgttcatctttgatggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtggataTACTGCTaacaaacctcatcagggggaaactgcttccctcagctcgcctctggataactacacgacctgcagcagccaatcagatcccccctggttgtgttgacatggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcaggaggAGATTCAGAGATGAGAAGCAGGCCgacagaatcatctcccacatcaagacatcacgaagcCTCCATATAATGtgtcacatcccagtcttctgctggatcactgctacagttctggaggacaTGTTGAAGACCAgtgagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggttcagtccaaagtAAAGAACATGAAGTATGATGGAAGAGCTGAGACAGATTTACCCTGGAGTCCAGAGAACATGGAGATGATtgagtctctgggaaaactggcttttgagcagctgcagaatggcaacctgatcttctatcaATCAGACCTGAGAGATTGTGGTATCGATAtcagagcagcctcagtgtgctcaggagtgttcacacagatctttaaagaggagagaggactgtaccagaacaaggtgttctgcttcatccatctgagtgtccaggagtttctggctgcacttcatgtccatctgacattcaccaactctggagtcaacctgctgtcagaagaacaaacaacatcaacacagttctaccagagtgctgtggacaaggccttacagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttcactgcagaccaatcagaatctcctacgaggtctgctgacacagacaggaagtagctcaCTGACCAATCAGGACACAGTGGAGTACATCAAGCAGAAGATCAATGGGAAGAAAAAGATGGATGGGAAGGTGAAGATGGATGGGGAGGAGAAGATCAGTAagaatctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgattgtTCTCTAGTGGAGGAGATCCAACGGTCCCTGAGTTCAGGACGTCTCTCCACAaataaactgtctcctgctgagtggtcagctctggtcttcatcttactgtcatcagagaAAGATCTGGAcatgtttgacctgaagaaatactctgcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320875 lncRNA upstream 28670 21573674 ~ 21574822 (+) True G236471
TU320885 lncRNA upstream 34344 21511535 ~ 21569148 (+) True G236481
TU320931 lncRNA upstream 72812 21526536 ~ 21530680 (+) True G236520
TU320916 lncRNA upstream 77957 21485854 ~ 21525535 (+) True G236506
TU320917 lncRNA upstream 111760 21490294 ~ 21491732 (+) True G236507
TU320882 lncRNA downstream 97 21605133 ~ 21674674 (+) True G236478
TU320874 lncRNA downstream 1899 21606935 ~ 21641708 (+) True G236470
TU320909 lncRNA downstream 2402 21607438 ~ 21617586 (+) False G236501
TU320828 lncRNA downstream 4135 21609171 ~ 21612252 (+) False G236459
TU320944 lncRNA downstream 33242 21638278 ~ 21646714 (+) True G236531
XM_039793682.1 mRNA upstream 211082 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA upstream 211082 21372616 ~ 21392410 (+) False cdk15
XM_039793688.1 mRNA upstream 231588 21367445 ~ 21371904 (+) True dph3
XM_039793687.1 mRNA upstream 311269 21289363 ~ 21292223 (+) True LOC120554662
XM_039793690.1 mRNA upstream 412047 21165803 ~ 21191445 (+) True LOC120554666
XM_039793689.1 mRNA downstream 6883 21611919 ~ 21612646 (+) True LOC120554665
TU320853 other upstream 180577 21407927 ~ 21422915 (+) False G236461
TU320855 other upstream 180577 21407927 ~ 21422915 (+) True G236461
TU320854 other upstream 180577 21410812 ~ 21422915 (+) False G236461
TU320856 other upstream 180577 21414237 ~ 21422915 (+) False G236461
TU320869 other upstream 242257 21302326 ~ 21361235 (+) False G236467
TU320943 other downstream 17462 21622498 ~ 21623439 (+) True G236530
TU320865 other downstream 20902 21625938 ~ 21633094 (+) True G236466
TU320866 other downstream 20902 21625938 ~ 21633849 (+) False G236466
TU320867 other downstream 20902 21625938 ~ 21633094 (+) False G236466

Expression Profile