RNA id: XM_039793688.1


Basic Information

Item Value
RNA id XM_039793688.1
length 1006
RNA type mRNA
GC content 0.37
exon number 3
gene id dph3
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21367445 ~ 21371904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCCTGAGACATCAGCCAGAGACGTCATCACTGCGTGCCACACAGCACGGATGGGTTTAACAAATGTGTTGAGCTAATGGCTAATTTTTTGTAGGTTTTTGAGCTCATCTCGCGCAGAAAATGTCGGTATTTCACGACGAAGTAGAGATCGAAGACTTTGAGTATGACGAGGAGACGGAGACGTATTACTTCCCCTGTCCTTGTGGAGACAAATTCGCCATAAGTAAAGAGGATCTGGAGAACGGGGAGGACGTGGCCACATGTCCCAGCTGCTCTCTCATCGTTAAAGTTATCTATGATCAGgAGCTGTTCATGTCGGGAGAAATCATCGAAGCGCCGTCGTCCACGGAAACCAAACGGGAGCTGGTTCAGTCCTCgtgacccccccaccccccccaaatcatcatcatcatgtgtAAAACAACGTACTGTACCTTTTAAATCCCCTTTTATTTatgcagagaggcagacagcTTCATGTTTTATGGATCAATCTTCAGTGTGAACATAAAAAACCTCATCATCAAAGTTTGttttatcagaaatttgggtttcttaacaaccaaattgcccaaaattaACACGGCTGCATGATGTACGTTATATGGAACCCATAAACGATCTTCACAGGTACAATTAatcattactttcattgaaattttggagttttattcaattttataacatttgaatatattttttaaatggtctAAAGACTAAAGTTTGACATTAAACAGTCTGTGATTCATTCAACATCTTCTGATATTAACTATTAGTCAACAAAATGCatcatttcagctttttttactCAAAAATGAGGTATATTGTCATTTAAATTTGATTTAATgaacatgaatttaaaaaagtgtttaGAAAAGttcaaaaaaaaagttaattttcaatTTATCATGGAGGTCTGGTCATGTCTCAGAGTATTAACTTATATTTTACTGTCTCGTGTGtaaatatttatgttttaacagaATTAAAACTCTTCAAACAGCA

Function

GO: NA

KEGG:

id description
K15455 DPH3, KTI11; diphthamide biosynthesis protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320870 lncRNA upstream 6210 21302326 ~ 21361235 (+) False G236467
TU320795 lncRNA upstream 22277 21246564 ~ 21345168 (+) True G236441
TU320868 lncRNA upstream 31915 21319013 ~ 21335530 (+) True G236467
TU320820 lncRNA upstream 36962 21296177 ~ 21330483 (+) True G236455
TU320803 lncRNA upstream 120321 21206768 ~ 21247124 (+) False G236446
TU320896 lncRNA downstream 1217 21373121 ~ 21373379 (+) True G236492
TU320797 lncRNA downstream 3533 21375437 ~ 21387338 (+) True G236443
TU320792 lncRNA downstream 4573 21376477 ~ 21378434 (+) True G236438
TU320793 lncRNA downstream 16566 21388470 ~ 21390145 (+) True G236439
TU320829 lncRNA downstream 52381 21424285 ~ 21435060 (+) True G236459
XM_039793687.1 mRNA upstream 75222 21289363 ~ 21292223 (+) True LOC120554662
XM_039793690.1 mRNA upstream 176000 21165803 ~ 21191445 (+) True LOC120554666
XM_039792560.1 mRNA upstream 201891 21157961 ~ 21165554 (+) True LOC120554012
XM_039793676.1 mRNA upstream 246675 21098583 ~ 21120770 (+) True LOC120554651
XM_039793669.1 mRNA upstream 303528 21049514 ~ 21063917 (+) False LOC120554645
XM_039793682.1 mRNA downstream 711 21372615 ~ 21392410 (+) True cdk15
XM_039793683.1 mRNA downstream 712 21372616 ~ 21392410 (+) False cdk15
XM_039793684.1 mRNA downstream 231588 21603492 ~ 21605036 (+) True LOC120554659
XM_039793689.1 mRNA downstream 240015 21611919 ~ 21612646 (+) True LOC120554665
TU320869 other upstream 6210 21302326 ~ 21361235 (+) False G236467
TU320732 other upstream 450668 20912655 ~ 20916777 (+) True G236394
TU320664 other upstream 545721 20815736 ~ 20821724 (+) False fmnl2b
XR_005638570.1 other upstream 857500 20487667 ~ 20509945 (+) False LOC120554724
TU320542 other upstream 970126 20383386 ~ 20397319 (+) False cd99
TU320853 other downstream 36023 21407927 ~ 21422915 (+) False G236461
TU320855 other downstream 36023 21407927 ~ 21422915 (+) True G236461
TU320854 other downstream 38908 21410812 ~ 21422915 (+) False G236461
TU320856 other downstream 42333 21414237 ~ 21422915 (+) False G236461
TU320831 other downstream 233046 21604950 ~ 21634001 (+) False G236459

Expression Profile