RNA id: TCONS_00007119


Basic Information

Item Value
RNA id TCONS_00007119
length 3375
RNA type mRNA
GC content 0.49
exon number 25
gene id XLOC_003664
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40530748 ~ 40605868 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGTGCTGAATTGGAGCAGTAAATCTCCTGAAGGGAACGGAGCAGTCGATCAGGACTGTGTGATTGCAGGGCAGGTCACCACACCATGACCAGAACACATCAATCTGCCCACTGCTGCTCGCACAAAAGACGGACGTCTCCAGCATTCGTGTCCATCACCTCCAGCATGCAATTCCTTATCTATAACTCAAGTCATCACAtcacTCAGTCAGAGGAACATCTGAGCAGACAGACAGAGCCTCTCCACATCCAGCTGTCCGGACGCTGATTCatttcaccacacaccagctctGGGTGCAAACTCAGGAGGGGTGTTTGGGAAATTGAAAGGCATCCTAAAAGGGCCAACCAGGACTCCATCATTAGAGAGCTCCAAGAATGGGAAAATCAGAGAGCCAAATGGATATCATGGAGAAAAGCACCAAACCGAGAAAGCATCGCTGGACTGTAGTGGAAATCGGACTGTCTGTGATTGTGCTTCTGATGAGCTGTGCACTGGCTGGACTCATAGTGCTCTACACTTCAGCGCTGAGAGAGCGTTTTAACATAAACGATTCTTCAAAAGGGCTGAAATATCGATCAGACGCCGACAGCAATGTCTGTACAACCCCACAGTGTGTCACTGCCGCGGCTCGTCTGCTCCAGAACATGGACCCCAGTGTGGACCCGTGCCAGAACTTTTATCAGTACGCCTGTGGAGGCTGGATCGAGCGGCACGTCATTCCTGAAACCAGCTCACTCCACAGCGTCTTCAACATCCTCCGAGACGAGCTGGAGATTGTGCTCAAGGGAGTTCTGGAGATGGAAAATAAGGATGACAGAGAGGCCTTCAAGAAAGCCAAAACACTCTACAGCTCATGCATGAACGAGATTCTGATCGAGCAGCGCGACTCGCAGCCTCTACTCCGGCTCATTGACAGCATTGGCGACTGGCCCGTGGCTTCAGAGGTCTGGAATGGCACATCAGAGCAGACGTGGAGCCTTGAGGACACGCTGGCTGTTCTGAACGGTCGCTATAATAAGAAGGCTGTGCTGGAGATGTTCGTGTGGCCAGATGACCGCGACTCCAGCCGCTACATCATCCATGTCGACCAGCCAGCTTTAGGAATGCCTTCAAGAGATTATTACCTCAGCGATGGGAATTACAAAAAGGTACGCGAGGCCTACCTGGAGTTCATGGTTTCAATGGCGAGGATTGCAAGGGAAGACAGAAATTTGACCCAAGATGAAGAGCGTGTGTTGGAGGACATGTCTCAAGTCCTGGAGCTGGAGACAGACATCGCTAACGCTACCTCACCAGCAGAAGAACGCAATGACATCACTGTGCTCTACAACAAGATGACGCTGAGAGAAGCGCAGCAAACGTTCAACCTCAATggCTTTAACTGGACGCGCTACATCCAGGGTATCATGTCCAGCGTGTCCATTTCAGTGCAATCAGATGAGCCCATTGTTATTTACTGCTCCCCTTACCTGGAGAAGCTCAGCGAGGTCCTGTCCAAACACAGCCACAGGACTCTGCAGAACTATCTGGTGTGGATGCTGATCATGGACAGGGTCAGCAGTATGAGCCGTCGCTTCAAAGACGTGAGAGCGCACTATAGAAAGGCTCTGCACGGCACTACAGTAGAAGAGGCTCGGTGGAGAGACTGTGTCCGATACGTTCAGGGTAACATGGAGAATGCGGTCGGAGCTCTATACGTGCGGGAAACCTTCTCTGGAAACAGCAAACGCATGGTGGGAGAACTGATCAAGAAGATTCAGGAAGCTTATGTGGAAACTCTGGAGGAACTGAGCTGGATGGATGAACAGTCCAAAGTGAAGGCCAGAGAGAAGGCCATGGCCATATCAGAACAGATTGGTTATCCCGACCACATCCTTGAAGAGGAAAATAAGAAGCTGGACCAGGAATATGCTCACCTTAATTTCAGTGAGGAAAACTACTTCGAGAACATTCTGGAAAACCTGGCAGCATCGGCTCAGAAAGGTCATAAAAAGCTGCGGGAGCCCGTGGATCCTGACATGTGGATTATTGGTGCGGCAGTGGTCAACGCCTTTTACTCACACAACAGAAATCAGATTGtgtTTCCTGCTGGCATCCTTCAGCCTCCGTTCTTCAGTGAGAAACAGCTGCAAGCTCTAAACTTTGGAGGAATCGGGATGGTTATAGGACATGAAATCACTCATGGATTTGATGATCACGGCCGTAATTTTGACAAGGATGGAAACATGTATAACTGGTGGAGCAACTACTCTGCTGAACGCTTCGAGGATCAGTCTAAATGCATGGTGGAGCAGTACGGCAGATTCAGCTGGAAACTTGCAGGAGGCCAAAATGTCAGTGGTATTACGACATTAGGAGAAAACATCGCTGACAACGGTGGAGTTCGTCAAGCTTATAAGgCGTATGTAAAGTGGGTGGAGAGGGAAGGCGAGGAGCCCCGTCTTCCCGGACTGGATATGAATCACAAACAGCTCTTCTTTCTGAACTTTGCTCAGGTCTGGTGTGGTGCTTGTCGCCCTGAGTACGCCATTCAGACTATCAAAACAGACCCACACAGCCCTCTGGAATACAGGGTTTTAGGTTCCCTCCAGAACTTTGAGGCATTTTCTGAAGCGTTTCACTGTGCGCGAGGAGCTCCCATGAACCCCGAGGAGAAATGTCGAGTGTGGTAACCTGCGTTCAGAGTTACAGGGGTCTGTGTGTATATTTTGTTGGGACGAGGCAGCGATGAGGAGAGCTTGGATCATATAATGTCGTGCTATTATTCCGCAGTGGCAGCTGCCTGTCTGTTAGTCTGATGTGACAGACACGAGCAAGGTGTCAGACACCTACATGTGTGATGCATAGATGTCTACTGTGAACTTTCCAAAAGCGCACATATAACCAACAAGTGCAGGCGTCGTCAACGTGCACAGTGAGGGTGTTGTTTTTCTGAAAAAGAGGCATGCTTTCTCCTTGTCTATTTATGAGCGTTTCCTTCTGGACACCTTATTAATTTTGGCACCGAAAACacacgtgaaaaaaaaaaagcgaaatagtttgattgcgacggattatttttttttccagattatGTAAACGGATAAATCCCTCGCTTGGCTTTTCAGTTTCTGTCGGCTCTCCAAGAAGACATCCGTTGTGCTTGAGCAAACCCGAAATTAGCCAACAACTGGAGGCTTGGAGGAAGACGGAGATTGTGGTTTTTTGAATAGAGCCCAGTCAAGGCATCAAGTGTCTTTTCATAATAAGCAGCCTTGGAAATATTTCGAGTGTGCTGGAAGATTTTGTTTTCTAAAGCATGCATTGGCGAAAGCGAGAGTCTCATTGAGCGCAGTTCTCCCCCCCCctcttctccaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-101112-2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human MMEL1 (membrane metalloendopeptidase like 1).

Ensembl:

ensembl_id ENSDART00000173239

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008674 lncRNA upstream 96668 40220055 ~ 40434080 (+) True XLOC_003662
TCONS_00008673 lncRNA upstream 414102 40111481 ~ 40116646 (+) True XLOC_003659
TCONS_00007113 lncRNA upstream 531950 39993997 ~ 39998798 (+) True XLOC_003657
TCONS_00007112 lncRNA upstream 553620 39969304 ~ 39977128 (+) False XLOC_003657
TCONS_00008419 lncRNA upstream 608209 39909576 ~ 39922539 (+) True XLOC_003655
TCONS_00008675 lncRNA downstream 259087 40864955 ~ 40865542 (+) True XLOC_003669
TCONS_00008676 lncRNA downstream 285813 40891681 ~ 40932395 (+) False XLOC_003671
TCONS_00008677 lncRNA downstream 285813 40891681 ~ 40950147 (+) False XLOC_003671
TCONS_00007132 lncRNA downstream 289826 40895694 ~ 40905200 (+) False XLOC_003671
TCONS_00007133 lncRNA downstream 291458 40897326 ~ 40899889 (+) True XLOC_003672
TCONS_00007118 mRNA upstream 219002 40306579 ~ 40311746 (+) True XLOC_003663
TCONS_00007117 mRNA upstream 315194 40208239 ~ 40215554 (+) True XLOC_003661
TCONS_00007116 mRNA upstream 362370 40148181 ~ 40168378 (+) True XLOC_003660
TCONS_00007114 mRNA upstream 458447 40032790 ~ 40072301 (+) False XLOC_003658
TCONS_00007115 mRNA upstream 458680 40043569 ~ 40072068 (+) True XLOC_003658
TCONS_00007124 mRNA downstream 12028 40617896 ~ 40641787 (+) True XLOC_003666
TCONS_00007125 mRNA downstream 43544 40649412 ~ 40674070 (+) False XLOC_003667
TCONS_00007126 mRNA downstream 43545 40649413 ~ 40674070 (+) False XLOC_003667
TCONS_00007128 mRNA downstream 51744 40657612 ~ 40663238 (+) True XLOC_003667
TCONS_00007129 mRNA downstream 206722 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007097 other upstream 1727010 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 1942182 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 2879784 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007127 other downstream 43603 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007131 other downstream 283312 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 504801 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 529741 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 859239 41465107 ~ 41465236 (+) True XLOC_003680

Expression Profile

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