RNA id: XM_039793717.1


Basic Information

Item Value
RNA id XM_039793717.1
length 2194
RNA type mRNA
GC content 0.52
exon number 11
gene id ccdc14
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14589062 ~ 14598938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtagaaataataataaaaaaaaagccgaCAACACGCTTTAAACCCATCAGCTATCGTCAGTATATAGCTAGCTAAAATAGTCAAAACAGTCTCCTCTGTGTTTGGCAGCACATAAATCAGTAGTAGCGTTAGTTTACTGAAGCTGCTGTGTTTCACCATGAAAGGAACTGCTAAAAGcaagGTGGTGACATCCGGGAGGCTGACAGGAGGAGTCAAAGGGCAGCTGGCCAGGAGACGAGTGACTCCAAAACCAGGACCAGCAGCCTGCCCTGAGCCAGCCTACTCTCTGTACTCCACAGACTCTGAAGACCAGGTTACTTCTCTCCATAAGGGTCTAGACCGGTGTGCTGCCTTGCTCGGTGGCATCCTTCAGGCTGAGAAGACGGGCCTTCCCAAAGCAGTGAAGTGTGGAGCAGCTAAATCAAGACCATCTACCTCACGAATAAAGAAAACCATCAAGAATACAGACCAGAAGAGCTGTCAGTCAAGCAGCACAGCTCCAAGAACAACTCCTCCGTCTGCTGTCCCAGCTGCACACTCGCAAGGGAAGCTCCATCCAGCTCAGAAACACCCTCCCACCCTGCTGCAGTCTCACGTCCCTTCTTCACCCAGCCAAACACTGCAGCATCACCCTGCCACCAACCCTCCCCCCAAGCCCCAGACCTCCATCTCTCCACCCCAGCCCAACCCTCCCCCTCAGACTGACTGCCAGGCTGCTTCTGAAGCTCCACGCCCACGTTGCCAGGCCGAGCGCGATAGAGAAGAGGAGTTTGTTCCTGTGAGAGACATCAATGCCCAAAGCACTGCCGCGGACCCACACGCAGCCGTCGGACACACACCCTCGCACGTAAACACCTGTACCTTGAAGATGTCAAACATGCAGCTAGAGCTCGGAAAAGTTAATAACGTCCCTCAGGACCCACACAGCGGGGAGGACTGCAGCGCAGAGAAAGAAGGGAAATTGAAGACCGTTCAGTATCTGCTTGCAGAACTCAAGGCTCTGATCTCCGGACAAGGCAGTGTAGCAGAGAGGCTGCTCAGTCATCTGGAGCAGACGGTGTCTTCACCACTGATGAATGCTGGTGGGTCGAGCATCCCGACTGCACCAGACCTATCATCACTACACAGCCAGAACACTCAGCTCCGCAGACGTGTGAGGATTCTTAACCAGCAGTtaaaggagaaggagaaagctGAGAGGCAACAGAATATGGATACACTCTTTAACTCAGAAGAGTTGACTTTGCAGGAGGATCTCACGACCGCTCAGTCCCGAATGCAGGAGCTCCAGGATGACCTCGCGGAACTACGGAAAGCCCTTCAGGACACACAGAGccagctgacagacagagaagcaCATAATGCAGTCATCAAAACAGacttgGAGGCCACTAGAAGCAGGTTGCTGGACAGTGAGCGAGAGAAGAGGGAGTTGGCTTCACTTGCCCAGCAAAGACTGGAAGAGATAGGAAACCTTAaaagGATTCTTCAGAATCAGGAGTCATTAAATTGTCCTACAGCTGTTGACAGCTCAGTCTTAGACACTGTGCcaacaaaacaacatttcaaCCCACACCAGAACAGACAGGATCCAGTAGAGCCCCCCACTGACCGCATCACCCAGTTCCTGATGtctctggatcagctggagccAACACACACTGAGCACGCGTGCGCGGCCGCAGAGAGCGAAGGAAACGCACTGGAGCAGAAGAAACTGAACTCAGTCCGGCTGAGAGACACTTTATCACATCCCGAGGTCCGATCTCAGCAAGGGGACAAACCCGAAGACTCGGCCCGTCACCAAAACTCTCATCTTGACCAATCCCGTTGTTTAGATGAAGGCCAGTCGTGCGGGTGGCGGCTGGAGAAGAAGCGCAGACGCGTGTTGAACGCCACGCTGTCCCAGTGCGATGTGGAATCCGTGTGGTCCGACTGGAGCACGAGGTCAGGGTCGACCTTTGACACCAGAGACGAGGCAGCGTTCAGGGACGGCCTGGCAGCTCTGGACGCCAGCATAGCCAGTCTGCAGAAGACTATTCAACTGGATCTGGGGAAGTGATTCACACTCAGCTTtgcttatattatatattgtaatTCATACCCTCTTTTGTATTCTgcattttgcctttttttgtgaTGATTTTaacaagtggtatttcagataggaaataaagcatttaaaaaataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU318758 lncRNA upstream 115379 14473448 ~ 14473683 (+) True G234777
XR_005638308.1 lncRNA upstream 127311 14448891 ~ 14461751 (+) True LOC120554077
TU318739 lncRNA upstream 142800 14438958 ~ 14446262 (+) True G234763
TU318696 lncRNA upstream 232384 14356076 ~ 14356678 (+) True G234721
TU318695 lncRNA upstream 235412 14353419 ~ 14353650 (+) True G234720
TU318824 lncRNA downstream 46664 14645602 ~ 14646219 (+) True G234838
TU318827 lncRNA downstream 49186 14648124 ~ 14649049 (+) True G234841
TU318858 lncRNA downstream 267367 14866305 ~ 14887613 (+) True G234869
TU318885 lncRNA downstream 404691 15003629 ~ 15013712 (+) True G234895
TU318905 lncRNA downstream 421294 15020232 ~ 15020564 (+) True G234908
XM_039793641.1 mRNA upstream 2319 14571126 ~ 14586743 (+) True ddx4
XM_039793642.1 mRNA upstream 2319 14571126 ~ 14586743 (+) False ddx4
XM_039793119.1 mRNA upstream 44444 14531790 ~ 14544618 (+) False LOC120554303
XM_039793118.1 mRNA upstream 44444 14532776 ~ 14544618 (+) True LOC120554303
XM_039793631.1 mRNA upstream 80650 14499284 ~ 14508412 (+) True atp1b1b
XM_039793537.1 mRNA downstream 16119 14615057 ~ 14636819 (+) True LOC120554576
XM_039793538.1 mRNA downstream 16157 14615095 ~ 14636819 (+) False LOC120554576
XM_039792595.1 mRNA downstream 42775 14641713 ~ 14645495 (+) True cryaa
XM_039792676.1 mRNA downstream 52204 14651142 ~ 14794465 (+) True LOC120554076
XM_039793718.1 mRNA downstream 207589 14806527 ~ 14828105 (+) False LOC120554715
TU318609 other upstream 444192 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 1563542 13002963 ~ 13025520 (+) False G234425
TU318349 other upstream 1563542 13002963 ~ 13025520 (+) False G234425
TU318345 other upstream 1567074 13002963 ~ 13021988 (+) False G234425
XR_005638294.1 other upstream 1792387 12786641 ~ 12796675 (+) False LOC120554049
TU318853 other downstream 207606 14806544 ~ 14838091 (+) True LOC120554715
TU318854 other downstream 207606 14806544 ~ 14910075 (+) False LOC120554715
unassigned_transcript_1593 other downstream 1331356 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 1331885 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 1334697 15933635 ~ 15933716 (+) True trnas-uga_26

Expression Profile