RNA id: XM_039793724.1


Basic Information

Item Value
RNA id XM_039793724.1
length 1482
RNA type mRNA
GC content 0.63
exon number 9
gene id abi2b
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 18113995 ~ 18143453 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGAGAGccctcccccacacacatacacatacacacacacacgccgctcCGCTAAAGATGTGAAAATGGCGGAGCTACAAATGCTTTTGGAAGAGGAGATTCCAGCAGGGCGAAGCGCACTACTAGACAGCTTCACCAATTTGGAAAGAGTCGCGGAGTACTGCGAAAGCAACTATGTCCAGtctCCAGACAAGCAGAGGGCCCTGGAGGAGACCAAGAACTACACCACCCAGTCTCTGGCCAGCGTCGCCTACCTGATCAACACGCTGGCCAACAATGTCCTCCAGATGCTGGACATCCAGGCCTCGCAGCTCCGCCGCATGGAGTCCTCCATCAACCACATCTCACAGACGGTGGACATCCACAAAGAGAAGGTGGCCCGGCGGGAGATCGGCATCCTCACCACCAACAAGAACACGTCCCGCACGCACAAGATCATCGCCCCAGCCAATCCCGAGAGGCCTGTGCGCTACATCCGCAAGCCCATCGACTACAGCATGCTAGACGACATGGGCCACGGAGTCAAGTGGTTGCAAAGGTTTAAGGCCAGCGCTCAAAACATGAAGGCCGGAGGCGGCGGACTCCCTCGCACAAACCCCCCCACACAGAAGCCCCCCAGCCCGCCCATGTCGGGGAAAGGGACCCTTGGcAGCGGGAGCAGCGGAGGCAGCCATCCCAGCAGCAGTCGCAGCAGCAGCCGAGAGAACAGTGGCAGTGGCAGCGTGGGCGTGCCCATCGCCGTGCCGACCCCAGCCCCGCCCACCGCCTTCCCAGGCGCTCCTCAGTTCTACAGCATGAACCGCCCGGCGCAGCCACCCCAGAACTCGCAGGTGGGAGGCTCGCTGCCGTATCGCCGACCCGCGTCCGTCACCGGTCAGCCCAACATGGCCCACAACCAAAGCCAGCTCAACGGGGGACCACACTTCGCCCAGAACCCAGTCTCAGACGTGCCGCCTCCACCTCCGCCCGCCGAGGAGCCGGTGTTTGAGGAacccacacctcctcctccgccGCCGGAGGACTACGAGGACGACGAGGACGAGGAAGAGTCGGCCGTGGTGGAGTACAGTGACCCGTACGCCGAGGAGGACCCGCCCTGGGCCCCGCGCACCTACATGGAGAAAGTGGTGGCCATCTACGACTACGCCCGCGACAAGGAAGACGAGCTCTCGTTCCAGGAGGGCGCCATCATCTACGTCATCAAGAAGAACGACGACGGCTGGTACGAGGGCGTGATGAACGGCACCACGGGCCTGTTCCCCGGCAACTACGTCGAGTCAATCATGCACTACGCCGACTGAacaacccccccgcccccctgccccctccctctctcagcGGCGGAGGAGTAAAGGGAGGAGCGTTAGACGGGGGGagtggagggggagggggagccGTGGGTTTAAAGGTCAAAGACTTTGATCAGACAGAGCATGATCACCTCCGGGCGAAGAGAGAAccgggagggaggaggaggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319993 lncRNA downstream 38 18062294 ~ 18113957 (-) False G235793
TU319995 lncRNA downstream 38 18110336 ~ 18113957 (-) True G235793
TU319927 lncRNA downstream 127817 17985922 ~ 17986178 (-) True G235743
TU319909 lncRNA downstream 170498 17943210 ~ 17943497 (-) True G235725
TU319906 lncRNA downstream 173723 17939114 ~ 17940272 (-) False G235724
TU320026 lncRNA upstream 67052 18210503 ~ 18214168 (-) True G235816
TU320056 lncRNA upstream 109373 18252824 ~ 18300953 (-) True G235844
XR_005638536.1 lncRNA upstream 113492 18256943 ~ 18257506 (-) True LOC120554613
TU320063 lncRNA upstream 127627 18271078 ~ 18276814 (-) False LOC120554370
TU320066 lncRNA upstream 127691 18271142 ~ 18276814 (-) False LOC120554370
XM_039793650.1 mRNA downstream 11964 18029836 ~ 18102031 (-) False LOC120554632
XM_039793645.1 mRNA downstream 32437 18029836 ~ 18081558 (-) True LOC120554632
XM_039793649.1 mRNA downstream 32438 18029836 ~ 18081557 (-) False LOC120554632
XM_039793647.1 mRNA downstream 32438 18029836 ~ 18081557 (-) False LOC120554632
XM_039793648.1 mRNA downstream 32438 18029836 ~ 18081557 (-) False LOC120554632
XM_039793727.1 mRNA upstream 526 18143977 ~ 18158300 (-) True LOC120554721
XM_039793728.1 mRNA upstream 16365 18159816 ~ 18176708 (-) True LOC120554723
XM_039793730.1 mRNA upstream 16365 18159816 ~ 18176707 (-) False LOC120554723
XM_039793729.1 mRNA upstream 16365 18159816 ~ 18174157 (-) False LOC120554723
XM_039792650.1 mRNA upstream 34119 18177570 ~ 18186577 (-) True LOC120554053
TU319844 other downstream 368795 17734731 ~ 17745200 (-) False s100b
TU319472 other downstream 1010478 17064302 ~ 17103517 (-) True G235350
unassigned_transcript_1690 other downstream 1205577 16908345 ~ 16908418 (-) True trnat-agu_62
unassigned_transcript_1689 other downstream 1206173 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1688 other downstream 1206510 16907413 ~ 16907485 (-) True trnat-cgu_23
TU320378 other upstream 1587868 19731319 ~ 19732537 (-) True G236111
TU320553 other upstream 2223890 20367341 ~ 20368433 (-) True G236277
TU320640 other upstream 2582952 20726403 ~ 20728427 (-) True G236340
TU320641 other upstream 2583079 20726530 ~ 20728427 (-) False G236340
TU320656 other upstream 2617257 20760708 ~ 20760992 (-) True G236349

Expression Profile