RNA id: XM_039793742.1



Basic Information


Item Value
RNA id XM_039793742.1
length 3225
RNA type mRNA
GC content 0.47
exon number 20
gene id bin1b
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2328511 ~ 2349442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATTAACAGAGAGAGCCGTGAACAGGACGATATCTGaatctgtccctctgctttgcTTTCCAAACTCCACCTGctttttgttgggtttttcttCTGTCACACATAAACCGGATTAAATTACGCATTGCACCTTTAAGAAGCTGTCACCGGGATTAGAGTTACGCGCGGAAGGGTTTTACGCACCGTCGGTTTCCAGAGCAGGGTGTCcttctccctctgtgtgtctttctcttcgCTGGTCCTGACACCACCGGGGAGCCCTGCACGCCGAGCGACATGGCCGAGATGGGGAAAGGGGTCACCGCCGGAAAACTGGCCAGCAACGTCCAGAAGAGGCTCACCAGGGCGCAGGAGAAGGTCCTGCAGAAGCTCGGCAAAGCAGACGAGACCCGAGATGCCGCCTTTGAGGAGATGGTGGCCAACTTCAACAAGCAGATGACAGAAGGAACCAAACTGCAGAAAGACATGAAAGCCTACCTTGTAGCAGTGAAAACGATGCACGATGCGTCTCGGCGGCTTCAGGACTGTCTGGCCGAGATGTACGAACCCGACTGGTTTGGCAAAGAGGAGATGGACACGTTGATAGAGGAGATGATAGAGAAGGAGATGGACAATAACTTGGAGGACACAGACACTCTGTGGCTGGACTACCACCAGAACATCATGGACAAATCTATGACCACTCTGGACTCGTACCTGACTCAGTTTCCTGATATTAAGGCTCGTATAGCCAAGCGCGACAGGAAGATGGTGGACTTCGACAGCGCCCGGCATCACTTCAACTCCTtacagaaaggaaagaaaaaggacGAGGCCAAGATCGCCAAGCAAGCAGCCCTGTTGGAGATGGCGGCTCCCAGCTGGGCTCAGGGTTTGATATCAGCCCACCAGGTGGCTCAGACTAACCTCTCCTTCAACCAGGCAGAGGAAGAGCTGGGCCGAGCTCAGAAGATTTTCGAGGAGCTGAACGTGGAGTTACAAGACGAGCTTCCAGCACTCTTTGACAatcgtGTTGGCGTCTATGTTAACGCATTCCAGAGCCTGGCAGGTCATCAGGAGAAGTTCCACGGGGAAATGAGCAAGCTCAGCCAAAACCTGAACGACATCATGACCAAACTGGAAGAGCAGCGGGAGCTCAAAAAAGCTGGTACTGCAGAAGCAAAGACAGGAGAAGGTGCCAAGAGcgAGGAAACCAACCACAGCGAATCGGCCAGCTCACCACCAAAGGCGGTGCAGAGGCCAGGTCCTCCTCCCAGTCGGCCTCCGCCCCGACTGACGCCGTCTCAGCATGTCGGCCCCACAGAGGACGAGGTCTCGGTGCCTGACGCTCACTCAGACTCCAGCAGCACCACCACGACAGAGCAGcagtgTGAGCCCTGCTCCGGGGTGAACCTGCTGGATTGGGATGTGGAGGTTTTACAGCCCATCACATTTCCAGCTCCCAAGGCACCATCATTGGACTCATGGCAACAACAAACCGCCGCAGAGCAGGAACCCCAGCATGATGTTGACCAACACCCAGAGCAGGCCCCTGGTGGCTGGGATTACGATGAACACAGCACCCAGAGCTCCTCCCAGCCCAGCTGGGACAATGTAGAAACTGCTCAGCGCCAGGAGAGCTGGGGCAGCGATGGAGTCTATGCCGCTCAGTCGTACACTGAGCCCAACTGGGACGACGACGGCTCCCGAGTGGGACAGGGTGGCTGGGGCGATGATGGAGAGGTCAAGAGTGCAGTGACCAACGGCTCAGATGACAAACTCCCTCCAGGATTCCTCTACAAGGTAAAAGCTATACATGAGTATGCTGCCACTGACGCCGATGAGCTGGAACTGAAGATCGGGGATGTTGTGCTGGTTTTGGCTTTCGACAATCCAGATGAACAGGACGACGGCTGGCTCTTGGGTGTGCAGGAGTCTCACTGGCTACAGAACAAAGATATTTCAGTCAAAGGCGTTTTCCCTGAGAACTTCACTCAGAAAGTTTGAGGTTCATGCCACAAAGATTCTTCTTCCCCTTCTGCGCCCGAAACTTCTCAGATATTTAGATATAACTGGtcaccaaatgtgtatttacACACCAAAATGTATCCGTACATGATTAGAAATGTGTGCTGAAATGAGAGTACTTCTCAAAAGGCTATGATACTAAATGTTTGGGCCGTGATCTCATGATCACCAAACTAATATAACGTTATACCGACTCTGCACAatcataaaaaatgttttagtcaAATTGTACACCCAaactttaacatttttattttgttttgatttcttATTCATTAACTATTTATACGCTGAACTCAAACGAAACACAAAACAATGTGTTGGATATattcaaaaaggaaaaaaaagtcatggatGTATTGTATGAATGTCAGAATGTTTTATGTTGTGTACTGTCACCAGTTTGAGAACTTTTCACAGTTCCTTGCATGACGCATTTGATTGTATTGTCTTTTACCTttgtaacacaacaaacactgtGACACCAGCTCTACGTATGACACGTGGCTAAGATTGTCTGAAAAATGCAGGTGTCCTAGAATGGAGCCCTGGGGAACACCACAGATAAAAATAGGCTTTGCCTTGCATTATTACAGTTGCTTGGGCTTGTAGGATTATAAAAGGGAACAGTAGTTTTTCATTTATCTTACCGGCCATTTTGAGGACATGACTTGGTGTGTGGCTTACATTTTCTAATGCACATTGCTgttatttagatttttgaaTTATATTTTCATTTATGGGTGAAATACAAAACCTTATCAAACTCAGCTGCTCATATTTTCCTTCATCTTCTTTAATTACCACTATTTAATTACCACTATAGTTTAGATGTCATACTTTGAGACAGGAGATGTATGCTATTTAACTCTAAACATTTCCCACATTAATTTGATTCTTGATCTTTGTTCTCCCTTGGACAGGACTATCTAGCACTGGATCACTAATGTACAAGCATATTTTCTTTAGTGTTTTTTTCCAGTAGAAATCAGGTTTAGGCTGCATACTGTGAGCCAATGGAGTCCAAAACTGCACCGCCAGCAGCTAAATGAGAGACTGAGGCTATAACATTAACATTTCTAACCAAATATCCTGCAGAAACCAAAGTTAAACCCatcaaaactgtatttttacattgtgtgtAATTAAGGAATCAAGTGGTAACTAATGCACCATCTGTTAGATCAAGTCAGTGTCATTAAAGATGAATGAAACAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU314080 lncRNA upstream 41552 2270053 ~ 2286959 (+) True G231573
TU314083 lncRNA upstream 45618 2281219 ~ 2282893 (+) True G231574
TU314071 lncRNA upstream 111899 2214653 ~ 2216612 (+) True G231564
TU314062 lncRNA upstream 132133 2196040 ~ 2196378 (+) True G231555
TU314002 lncRNA upstream 217737 2107353 ~ 2110774 (+) True G231503
TU314706 lncRNA downstream 13451 2362893 ~ 2406781 (+) True G231910
TU314733 lncRNA downstream 74488 2423930 ~ 2436263 (+) True G231935
TU314738 lncRNA downstream 97389 2446831 ~ 2448437 (+) True G231940
TU314729 lncRNA downstream 139703 2489145 ~ 2494174 (+) True sumo1
TU314753 lncRNA downstream 151782 2501224 ~ 2503301 (+) True G231955
XM_039793734.1 mRNA upstream 70484 2245711 ~ 2258027 (+) True LOC120554727
XM_039792593.1 mRNA upstream 221384 2100152 ~ 2107127 (+) False LOC120554020
XM_039792592.1 mRNA upstream 221384 2100152 ~ 2107127 (+) True LOC120554020
XM_039792598.1 mRNA upstream 296756 1964757 ~ 2031755 (+) True LOC120554025
XM_039793630.1 mRNA upstream 489270 1828526 ~ 1839241 (+) True LOC120554615
XM_039793759.1 mRNA downstream 1102 2350544 ~ 2352359 (+) True LOC120554740
XM_039793758.1 mRNA downstream 1102 2350544 ~ 2352359 (+) False LOC120554740
XM_039793757.1 mRNA downstream 4206 2353648 ~ 2356348 (+) True LOC120554738
XM_039793766.1 mRNA downstream 58453 2407895 ~ 2417552 (+) True desmb
XM_039793130.1 mRNA downstream 139693 2489135 ~ 2491960 (+) False sumo1
TU314015 other upstream 229762 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 233112 2095271 ~ 2095399 (+) True LOC120554798
TU313924 other upstream 552898 1748073 ~ 1775613 (+) False G231461
unassigned_transcript_1550 other downstream 460070 2809512 ~ 2809584 (+) True trnar-ccu_18
unassigned_transcript_1551 other downstream 460526 2809968 ~ 2810040 (+) True trnar-ccu_19
TU314879 other downstream 550371 2899813 ~ 2906486 (+) True G232031
TU315244 other downstream 1204136 3553578 ~ 3590879 (+) True LOC120554435
unassigned_transcript_1554 other downstream 1851120 4200562 ~ 4200634 (+) True trnam-cau_63