RNA id: XM_039793766.1


Basic Information

Item Value
RNA id XM_039793766.1
length 1560
RNA type mRNA
GC content 0.60
exon number 10
gene id desmb
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2407895 ~ 2417552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGGCTTTCTGAATCTTCCAACAATGGCGTCCTACAGCTCTTCCGCCCAAACTGCCTCCTCCTACCGCCGCCACTTCGGCCAAGGTAGCTACGCCTCGCCCTCCCTCAACCGCTCGCTGCTGGGCCACAGCGGGGGCGGCGGGGGCCACGTCTCCTCCAGGGTCTATGAGGTGACCCGGAGCAGCTCCACGCCGGCCTACCGCGTCTCCTCCAGCTACTTCGGGAAGCCCCTGGCCACCTCCCGGGCCTCGGTCGGCCGCTCCTACGCCGGCATGGGCGAGACGCTGGACTTCAGCCTGGCCGACGCCCTCAACCAGGAGTTCCTGACCACACGCACCAACGAGAAGGTGGAGCTCCAGCACCTCAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAACCAGGCGCTGGCGGTGGAGGTGGAGCGCCTGCGCGGCCGCGAGCCCACACGCATCGCCGACCTGTACGAAGAGGAGATGAGCGAGCTGAGGAGGCAGGTGGAGATTGTGACCAATCAGAGGTCACGGATAGAGGTGGAGCGCGACAACCTGCTCGACGACGTTGACAAGCTCAAACTCAGACTCCAGGAGGAGATTCTCCAAAAAGAGGACGCAGAAAACAACCTGACTGCTTTCAGGGCGGATGTGGACGCTGCCACTCTGGCTCGTCTGGACCTGGAGAGACGCATCGAGACGCTGCAGGAGGAGATCGCCTTCCTGAAGAAGATCCATGAAGAgGAGATCCGCGAGCTGCAGATGCAGATGCAGGAGTCTCAGGTGCAGATCCAGATGGACATGTCCAAGCCGGACCTGACGGCGGCGCCCGCGGACATCAGAGCCCAGTACGAAGGTATCGCCGCCAAGAACATCTCTGAGGCCGAGGACTGGTACAAGTCCAAGGTGTCCGACCTGAACCAGGCAGTGAGTAAAAACAACGAGGCGCTGAAGCAGGCCCGGCAGGAGACCATGGAGTTCAGGCACCAGATCCAGTCCTACACCTGCGAGATTGATTCGCTGAAAGGCACCAACGAGTCCCTGATGAGGCAGATGAGGGACATGGAGGACCGGCACGGACGTGAGGCCAGCGGTTTCCAGGACAACATCGCCCGGCTGGAGGCGGAGATCGCCAACATGAAGGACGAGATGGCACGCCACCTCCGCGAGTACCAGGACCTGCTCAACGTCAAGATGGCGCTGGACGTGGAGATCGCCACCTACAGGAAGCTGCTGGAAGGGGAGGAGAGCAGGATTACCTTGCCTGTGCAGAGCTACTCCACCCTGAGCTACAGAGAGACCAGCCCCGAGCACCAGCAGCGCTCCTCTGAGATGCATTCAAAGAAAACGGTCCTCATCAAGACCATCGAAACCCGCGATGGAGAGGTCGTCAGCGAGTCCACGCAGCACCAGAAAGACATCATGTAACGGTCTGTGGGAGAGAAGAtaagaagaaacaaaaaaaacaccacatctGTCCTTCTCGGAGTCTGacagaagaacacaaacaagaaAAGATGAGCGAATAAAACTAAAAGTCAAAAGAC

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07610 DES; desmin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314706 lncRNA upstream 1114 2362893 ~ 2406781 (+) True G231910
TU314080 lncRNA upstream 120936 2270053 ~ 2286959 (+) True G231573
TU314083 lncRNA upstream 125002 2281219 ~ 2282893 (+) True G231574
TU314071 lncRNA upstream 191283 2214653 ~ 2216612 (+) True G231564
TU314062 lncRNA upstream 211517 2196040 ~ 2196378 (+) True G231555
TU314733 lncRNA downstream 6378 2423930 ~ 2436263 (+) True G231935
TU314738 lncRNA downstream 29279 2446831 ~ 2448437 (+) True G231940
TU314729 lncRNA downstream 71593 2489145 ~ 2494174 (+) True sumo1
TU314753 lncRNA downstream 83672 2501224 ~ 2503301 (+) True G231955
TU314759 lncRNA downstream 113322 2530874 ~ 2532587 (+) True G231961
XM_039793757.1 mRNA upstream 51547 2353648 ~ 2356348 (+) True LOC120554738
XM_039793759.1 mRNA upstream 55536 2350544 ~ 2352359 (+) True LOC120554740
XM_039793758.1 mRNA upstream 55536 2350544 ~ 2352359 (+) False LOC120554740
XM_039793754.1 mRNA upstream 58453 2328513 ~ 2349442 (+) False bin1b
XM_039793130.1 mRNA downstream 71583 2489135 ~ 2491960 (+) False sumo1
XM_039793528.1 mRNA downstream 171458 2589010 ~ 2647401 (+) True LOC120554571
XM_039793530.1 mRNA downstream 182920 2600472 ~ 2647401 (+) False LOC120554571
XM_039793529.1 mRNA downstream 191310 2608862 ~ 2647401 (+) False LOC120554571
XM_039793531.1 mRNA downstream 207537 2625089 ~ 2647401 (+) False LOC120554571
TU314015 other upstream 309146 2096875 ~ 2098749 (+) True G231514
XR_005638581.1 other upstream 312496 2095271 ~ 2095399 (+) True LOC120554798
TU313924 other upstream 632282 1748073 ~ 1775613 (+) False G231461
unassigned_transcript_1550 other downstream 391960 2809512 ~ 2809584 (+) True trnar-ccu_18
unassigned_transcript_1551 other downstream 392416 2809968 ~ 2810040 (+) True trnar-ccu_19
TU314879 other downstream 482261 2899813 ~ 2906486 (+) True G232031
TU315244 other downstream 1136026 3553578 ~ 3590879 (+) True LOC120554435
unassigned_transcript_1554 other downstream 1783010 4200562 ~ 4200634 (+) True trnam-cau_63

Expression Profile