RNA id: XR_005638283.1


Basic Information

Item Value
RNA id XR_005638283.1
length 520
lncRNA type inter_gene
GC content 0.58
exon number 3
gene id LOC120554032
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19318304 ~ 19395896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTTCTCCTGTCGCAGGCTGGATCTCACTTCTCTTGTTTGATATCTCCTCGCTCCACGGCTGAACCAGAAGTTGTTCTGGCCCTCCttcgtgaaggccgtctcaaagctcttattcctgccccgaggagcgaggatggaggagggatctctgagggaGCTACGAGCGAGGATACAAATTCACGTGACGCATTCAGAGCATGTCCATACACTTGTAGGCGTTGCACAGCGTGAGCACGTCTGCATGTTACTCCTCTGCGACTGTTAGTGGGTCCGCATGTGACTGCCTCCGCTGGGTCCCAGCGGGGGGGCTGCGGGTGGCCCCGCCCACCCCAGGCCGGTTCCAGCCAATCAGGTGCTAATGTGCGGGAACAGGAGAGGGCTGCGCTGACAGATGGCCGGCTGACCTGGAAAACCTGCCCCCCTTTTCAGGGTTCAGCAGTCGGCAGATGACAGAGAGGTCAGAAGTCAGGGCCACAGCTTCACATCGCACACAAGTAATGGAGTGAAAAACCTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320187 lncRNA upstream 57443 19260568 ~ 19260861 (+) True G235956
TU320156 lncRNA upstream 140515 19177469 ~ 19177789 (+) True G235926
TU320154 lncRNA upstream 173867 19144221 ~ 19144437 (+) True G235924
XR_005638302.1 lncRNA upstream 175857 19139865 ~ 19142447 (+) True LOC120554064
TU320142 lncRNA upstream 189128 19127693 ~ 19129176 (+) True G235912
TU320205 lncRNA downstream 93453 19489349 ~ 19489734 (+) True G235974
TU320206 lncRNA downstream 95515 19491411 ~ 19491663 (+) True G235975
TU320213 lncRNA downstream 121046 19516942 ~ 19517407 (+) True G235982
TU320214 lncRNA downstream 121571 19517467 ~ 19517931 (+) True G235983
TU320224 lncRNA downstream 141242 19537138 ~ 19537991 (+) True G235993
XM_039793123.1 mRNA upstream 190650 19024148 ~ 19127654 (+) False zeb2b
XM_039792649.1 mRNA downstream 117006 19512902 ~ 19522669 (+) True LOC120554051
XM_039792552.1 mRNA downstream 189639 19585535 ~ 19599669 (+) True LOC120554004
XM_039793805.1 mRNA downstream 206825 19602721 ~ 19607000 (+) True si:ch211-246m6.4
XM_039793651.1 mRNA downstream 275976 19671872 ~ 19698893 (+) True anos1a
XM_039793652.1 mRNA downstream 275976 19671872 ~ 19698893 (+) False anos1a
TU319969 other upstream 1136492 18176825 ~ 18181812 (+) True G235778
TU319966 other upstream 1146350 18167286 ~ 18171954 (+) True G235775
XR_005638333.1 other upstream 1357742 17953139 ~ 17960562 (+) True LOC120554216
unassigned_transcript_1702 other upstream 2213091 17105141 ~ 17105213 (+) True trnat-cgu_30
unassigned_transcript_1701 other upstream 2213663 17104568 ~ 17104641 (+) True trnat-agu_66
TU320432 other downstream 600903 19996799 ~ 19997667 (+) True G236162
XR_005638373.1 other downstream 812433 20208329 ~ 20233795 (+) False prkx
TU320542 other downstream 987490 20383386 ~ 20397319 (+) False cd99
XR_005638570.1 other downstream 1091771 20487667 ~ 20509945 (+) False LOC120554724
TU320664 other downstream 1419840 20815736 ~ 20821724 (+) False fmnl2b

Expression Profile