RNA id: XR_005638347.1


Basic Information

Item Value
RNA id XR_005638347.1
length 1911
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id LOC120554274
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15482306 ~ 15485487 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagctggcccagcatcaaccacagcagcccccgcagtaaccacagctgccccagcagtgacgacagcggCCCCATTATCAACCACAGcttccccagcagtaacaacagctgcaccagcagtaacaacagcggCCCCTGCTTTAACCATTGCTGcaccagcatcaaccacagctgccccagcagtaacaacagctgcaccagcagtgacgacagctgccccattatcaaccacagctgtcccagcagtaacaacagcagcCCCTGCAGTTACAACAGCTGCCCCTGTAGTAACAACAGTTGGCCCaccatcaaccacagctgccccagcagtaacaacagctgctcccgcagtaaccacagctacCCCAGCTGTGAcgacagcggccccagcagtgacaacagctgccccagcatcaaccacagctgccgcAGCAGGACCAACAGATGCCCCAGTATCAACCACAGCAGCACCAATCACTTTGGCCCCTGAACCAGTTTACATCCTCTCAGTAGACTTGACAGCAGTACCTTTTTCACCTGCCGTTAATGACTCCAGCAGCACTGAATTCAAAAACCTTGCACAACAAGTCATAAATATTTGTACTGCAATATACCAAAAACAATTTCAACAGATGCAATGTGAAAACGTTCagTGACTTATCTTCACGAGCAACTGGAACTGAAGCAATATTGCAGCAGGTCCAGTTTCAActactgctgcacctacaactacTATATCCActactgctgcacctacaactgtAGCACTCACAACAGCTAGGGTGTCTTTCAGATCTGTTAAAAGCACTTTTACAAACGACTTGCTGAATCCATCATCAGCAGCTTTTAAAAATCGAGCTGCAATGATAAAGGGACAGCTTGAACCTGTCTTCCAAAGGACATTCTCTTCATCCTTCAGGTCCTTGACAGTGGTTTCATTCAGCAGTGGATCAGTCATCAACACCATGGACCTTAGCTTTGTAAGCTAGGTCCAATAACACTAAGATTGCAAGCACGTTGATCAACGCAGCTTCAAGCGTCAGTGGCTTCTACATTGAAGGCAGCTCTATCAACGTTAATGGCATCTCTTCGGGTGGAGTAAGCCACAAAATCAGTCTCGTCACTGCATCCTGCCTGGTACTGTTGTCACGGCTACTCTAACGCAAGCAATAGCATCCTTGCTGAATTTACATCAGATCATGACAGTCATGACTGATATGAAAAGGCAATTTGTTGTCAGTAAATATCCAAAATTCATGATTGCATTAAGGCTTGACAGCTTTAGATAAATGTAATATCAGATGTAACTTTGCAAAATCCCTAGAGAGGTCAAACAATTGTGCAATGCAAAATAAAGGACAAAAGGgggtatgtacagtatgtgtatgcaGTGTATATTTAGCctatatgtagcctacatgtgtgcATATAAGTATGTAAATatttatgcatgtatgtgtgtatgtgtatgtgtatgtatgtgctaCATACAGTATGCCTATATGAAGTTGTACAGCTGTTCCTATAAGGTCaacaaaatgtacacacataGTTTAACTTTGTTGTCTGTAAACATCTTTTATTTTGCTTATTTTAAAAGCCCTTCTAGAAACAGGCATTAGAAATTAGCAGTAGCTATAAATGCTAAGATACATCACATTGGATAagtgtattaaattaaattacttAAATGGACACAATACTGACAGTGGATAGGAATGTTGTCGAACTGAACACGTTTCTGTGTGGGAATGTCCAGGATGCTGGGCTGGACAGAATGACACAGACAACTTTAAGCACCTAGTCCATTGAATCATCACTAGAATAAGCCAAAtgaactgagcatgtgtgtgtgtgtgtatttcaggcctgtgtgtagtgtgtaataacaTTAAATGACCATAAGCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638351.1 lncRNA downstream 52930 15428280 ~ 15429376 (-) True LOC120554277
TU319060 lncRNA downstream 113284 15368257 ~ 15369022 (-) True LOC120554282
XR_005638355.1 lncRNA downstream 113473 15368304 ~ 15368833 (-) False LOC120554282
TU319059 lncRNA downstream 115414 15366408 ~ 15366892 (-) True G235029
XR_005638341.1 lncRNA downstream 173017 15308508 ~ 15309289 (-) True LOC120554270
TU319096 lncRNA upstream 71151 15556638 ~ 15557416 (-) True G235053
TU319122 lncRNA upstream 174806 15660293 ~ 15665882 (-) True G235075
TU319213 lncRNA upstream 397138 15882625 ~ 15883001 (-) True G235151
XR_005638352.1 lncRNA upstream 488088 15973575 ~ 15991395 (-) True LOC120554279
TU319276 lncRNA upstream 646099 16131586 ~ 16132246 (-) True G235208
XM_039792540.1 mRNA downstream 383666 15092204 ~ 15098640 (-) True LOC120553991
XM_039793253.1 mRNA downstream 468492 14966316 ~ 15013814 (-) True LOC120554377
XM_039793250.1 mRNA downstream 521846 14935720 ~ 14960460 (-) False gucy1b2
XM_039793041.1 mRNA upstream 116828 15602315 ~ 15611660 (-) True LOC120554257
XM_039793032.1 mRNA upstream 137665 15623152 ~ 15633620 (-) False LOC120554251
XM_039793031.1 mRNA upstream 137665 15623152 ~ 15633620 (-) False LOC120554251
XM_039793030.1 mRNA upstream 137665 15623152 ~ 15627585 (-) True LOC120554251
XM_039793012.1 mRNA upstream 150943 15636430 ~ 15654565 (-) False LOC120554239
XR_005638386.1 other downstream 468492 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 519873 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 632569 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2370078 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2425619 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 300834 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 302840 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 304161 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 304729 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 305830 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile