RNA id: XR_005638351.1


Basic Information

Item Value
RNA id XR_005638351.1
length 505
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120554277
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15428280 ~ 15429376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaccacagcaacaacaaccacagctgccccaacaacaaccacagctgcagcaacaacaaccacagctgccccaacgaCAATCACAGAAGctgcaacgacaaccacagctgctctaaCAACAACTGCGACACAAGGCTTGGAATCACTGGTACATCTCCAGATGAAGATAACTTCTATTGGAGAGGTCAGCAATAAAACCATCATTGAAGGTGTGAAACAGTTTTTCAGAGAACAGCTTCTGAATTCAACAGCCTACACGATCACCGTGACAAACATTCAAAGGGTTACAGTTGCTCCATAGAAGCTGCTTGTGGATCTATAAAGTCACCTCAACCATTTTACTTGTTGACAGTTGGAACACAACACATCAATTTCCCCAAATCATAAGAAGTATCTAGATTGCACTTAAGGttcatccatgctctgctgtgccacactacatcctgtaatgccctgcagcgccctgatatgacatgaactactattatctttaatgtgactatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319060 lncRNA downstream 59258 15368257 ~ 15369022 (-) True LOC120554282
XR_005638355.1 lncRNA downstream 59447 15368304 ~ 15368833 (-) False LOC120554282
TU319059 lncRNA downstream 61388 15366408 ~ 15366892 (-) True G235029
XR_005638341.1 lncRNA downstream 118991 15308508 ~ 15309289 (-) True LOC120554270
XR_005638353.1 lncRNA downstream 237627 15189758 ~ 15190653 (-) True LOC120554280
XR_005638347.1 lncRNA upstream 52930 15482306 ~ 15485487 (-) False LOC120554274
XR_005638348.1 lncRNA upstream 52930 15482306 ~ 15485487 (-) False LOC120554274
XR_005638346.1 lncRNA upstream 52930 15482306 ~ 15485487 (-) True LOC120554274
TU319096 lncRNA upstream 127262 15556638 ~ 15557416 (-) True G235053
TU319122 lncRNA upstream 230917 15660293 ~ 15665882 (-) True G235075
XM_039792540.1 mRNA downstream 329640 15092204 ~ 15098640 (-) True LOC120553991
XM_039793253.1 mRNA downstream 414466 14966316 ~ 15013814 (-) True LOC120554377
XM_039793250.1 mRNA downstream 467820 14935720 ~ 14960460 (-) False gucy1b2
XM_039793041.1 mRNA upstream 172939 15602315 ~ 15611660 (-) True LOC120554257
XM_039793032.1 mRNA upstream 193776 15623152 ~ 15633620 (-) False LOC120554251
XM_039793031.1 mRNA upstream 193776 15623152 ~ 15633620 (-) False LOC120554251
XM_039793030.1 mRNA upstream 193776 15623152 ~ 15627585 (-) True LOC120554251
XM_039793012.1 mRNA upstream 207054 15636430 ~ 15654565 (-) False LOC120554239
XR_005638386.1 other downstream 414466 14969522 ~ 15013814 (-) False LOC120554377
unassigned_transcript_1569 other downstream 465847 14962361 ~ 14962433 (-) True trnar-ccg_4
TU318891 other downstream 578543 14847834 ~ 14849737 (-) True G234898
unassigned_transcript_1568 other downstream 2316052 13112158 ~ 13112228 (-) True trnag-gcc_27
unassigned_transcript_1567 other downstream 2371593 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1570 other upstream 356945 15786321 ~ 15786392 (-) True trnaq-uug_6
unassigned_transcript_1571 other upstream 358951 15788327 ~ 15788399 (-) True trnak-cuu_17
unassigned_transcript_1572 other upstream 360272 15789648 ~ 15789719 (-) True trnav-cac_14
unassigned_transcript_1573 other upstream 360840 15790216 ~ 15790288 (-) True trnak-cuu_18
unassigned_transcript_1574 other upstream 361941 15791317 ~ 15791388 (-) True trnaq-uug_7

Expression Profile