RNA id: XR_005638356.1


Basic Information

Item Value
RNA id XR_005638356.1
length 896
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120554283
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15563750 ~ 15566563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgtgttttctcttctgattaaaacaaaactgtttaAACCACAGAATAAGGATCAAACAATTacgaagctaacattagctagctggCTTTTAAGACAATGTACCATGGATGTCTTAATCAATACACTGTTAAAAGTTACCGCGAAAACAATGGCTTCTCTTTAAAGtggtatggacagttttcttgGATGGAATACAGTGTAAATAAGGACGAGCTTTTCTGCAGCATGTGCAGACATTTCCCCAGCGGAGCTGACAGCCCATCAGCCAGAGAGGAGGCCCTCACTGAGGTAACATTCGTTAAGTAAAACATGTTTCATGCTTCTCACGATGTGACCATAGTCCTGAAGCATATGGATAGGATATGTTACATGTGCGATGTttgtctgatgtaggctattctaTGTCATGCAGCATGTAATTTAGATGCCTTCTCTGCTGTTTGGGTTCATGATTAGTTCccactttgtgcaataaaatggTTAATTGTATAACAGTGCTGTGCAGAGCCAATGCTGCTGGCCCCTCAACCGGTTTCTTTACCCAGTAACCCAAAAGAAGACGTAAGAATGAGCTATCACAGGGGTGGCCACACCTTAACAACCCATTACTCATACAATTCCTGAATGTTGTTCACAACCTGATATCATGTTACCTGCTTTGTGTAAATGGGTATAAAAGGTGATGTGTGTTCAGAGAAGGACCTCAACCAGCAAACAGCAACAGGTGGAATCAGAGAGCATCACAGCTTCAATCACTGCAGTCAAGACAAATCTACGGTAGACAAAACCTtaTAGCACATCCcaaaatgatgatgaagatCTATGTCATCCTCCTTCTGTGTGTTGGAATAACAACCATggctgcagcaacaacaacagctgccgaACACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638342.1 lncRNA upstream 89743 15468814 ~ 15474007 (+) True LOC120554271
XR_005638339.1 lncRNA upstream 363009 15197999 ~ 15200741 (+) True LOC120554269
XR_005638340.1 lncRNA upstream 363009 15197999 ~ 15200741 (+) False LOC120554269
TU318920 lncRNA upstream 518230 15045224 ~ 15045520 (+) True G234919
TU318915 lncRNA upstream 521372 15041654 ~ 15042378 (+) False LOC120554227
TU319100 lncRNA downstream 47653 15614216 ~ 15614553 (+) True G235056
TU319121 lncRNA downstream 100309 15666872 ~ 15667356 (+) True G235074
TU319126 lncRNA downstream 110414 15676977 ~ 15683490 (+) True LOC120554272
XR_005638343.1 lncRNA downstream 110675 15677238 ~ 15682815 (+) False LOC120554272
TU319214 lncRNA downstream 317200 15883763 ~ 15884010 (+) True G235152
XM_039793049.1 mRNA upstream 105090 15456557 ~ 15458660 (+) True LOC120554262
XM_039793042.1 mRNA upstream 107613 15450271 ~ 15456137 (+) True LOC120554259
XM_039792542.1 mRNA upstream 190901 15334240 ~ 15372849 (+) True LOC120553993
XM_039792541.1 mRNA upstream 278565 15284502 ~ 15285185 (+) True LOC120553992
XM_039793022.1 mRNA upstream 493366 15061264 ~ 15070384 (+) False LOC120554245
XM_039792947.1 mRNA downstream 93732 15660295 ~ 15665637 (+) True LOC120554210
XM_039793002.1 mRNA downstream 141967 15708530 ~ 15856139 (+) False LOC120554235
XM_039793004.1 mRNA downstream 141967 15708530 ~ 15725044 (+) True LOC120554235
XM_039793005.1 mRNA downstream 141967 15708530 ~ 15725044 (+) False LOC120554235
XM_039793006.1 mRNA downstream 142161 15708724 ~ 15725044 (+) False LOC120554235
TU318854 other upstream 653675 14806544 ~ 14910075 (+) False LOC120554715
TU318853 other upstream 725659 14806544 ~ 14838091 (+) True LOC120554715
TU318609 other upstream 1418880 14115859 ~ 14144870 (+) True G234651
TU318348 other upstream 2538230 13002963 ~ 13025520 (+) False G234425
unassigned_transcript_1593 other downstream 363731 15930294 ~ 15930367 (+) True trnat-agu_17
unassigned_transcript_1594 other downstream 364260 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1595 other downstream 367072 15933635 ~ 15933716 (+) True trnas-uga_26
unassigned_transcript_1596 other downstream 371822 15938385 ~ 15938466 (+) True trnas-uga_27
unassigned_transcript_1597 other downstream 374300 15940863 ~ 15940943 (+) True trnas-uga_28

Expression Profile