RNA id: XR_005638571.1


Basic Information

Item Value
RNA id XR_005638571.1
length 360
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC120554725
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20753350 ~ 20754536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACTCACTTAGCAGAGGAGAGCGACGGAGAGGAGACAGCACTTTGGAGCTGGGAGTTTGATCTGGATTTTAGAGTAAAGAGTGAGATATTGAAAGAGGATGGAGAGGGCTGGGGCGTCAACCCAAAAGCCCAGAGCGATCAGGCAAGGACACAAATGTCCAATATGTGGGCTGGAGTACGCAGACTTAATGCAGCACCTTAAACTAGGTGAACGTGTGGTCAACAGAACAGAACTGGACCTGCTATCTAAGCTGGCACACAGACATTTCACGGCGAGCTTGGATTGCCCGGTACGTAACTGCAACTCCAGGAAGATGAACAGGCTGGACAAGCACCTTCTAAAAGTGCACAAACTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320650 lncRNA downstream 327 20752609 ~ 20753023 (-) False G236347
TU320652 lncRNA downstream 327 20752609 ~ 20753023 (-) False G236347
TU320653 lncRNA downstream 327 20752609 ~ 20753023 (-) True G236347
TU320654 lncRNA downstream 327 20752609 ~ 20753023 (-) False G236347
TU320633 lncRNA downstream 76049 20677054 ~ 20677301 (-) True G236335
TU320657 lncRNA upstream 7366 20761902 ~ 20762111 (-) True G236350
TU320660 lncRNA upstream 14169 20768705 ~ 20769165 (-) True G236353
TU320994 lncRNA upstream 46826 20801362 ~ 20801648 (-) True G236569
XR_005638382.1 lncRNA upstream 67198 20821734 ~ 20824815 (-) True LOC120554364
XR_005638381.1 lncRNA upstream 70298 20824834 ~ 20838767 (-) True LOC120554363
XM_039793653.1 mRNA downstream 297287 20442981 ~ 20456063 (-) True LOC120554635
XM_039792919.1 mRNA downstream 372858 20375593 ~ 20380492 (-) False dhrsx
XM_039793228.1 mRNA upstream 39810 20794346 ~ 20802270 (-) True LOC120554361
XM_039793230.1 mRNA upstream 39810 20794346 ~ 20802205 (-) False LOC120554361
XM_039793229.1 mRNA upstream 39810 20794346 ~ 20802202 (-) False LOC120554361
XM_039792558.1 mRNA upstream 90765 20845301 ~ 20850464 (-) True rgn
XM_039793201.1 mRNA upstream 99029 20853565 ~ 20867800 (-) True vps16
TU320640 other downstream 24923 20726403 ~ 20728427 (-) True G236340
TU320641 other downstream 24923 20726530 ~ 20728427 (-) False G236340
TU320553 other downstream 384917 20367341 ~ 20368433 (-) True G236277
TU320378 other downstream 1020813 19731319 ~ 19732537 (-) True G236111
TU319844 other downstream 3008150 17734731 ~ 17745200 (-) False s100b
TU320656 other upstream 6172 20760708 ~ 20760992 (-) True G236349
TU321082 other upstream 88956 20843492 ~ 20853383 (-) False rgn
TU321084 other upstream 88956 20843492 ~ 20853383 (-) False rgn
TU321086 other upstream 89515 20844051 ~ 20853383 (-) False rgn
TU321079 other upstream 90825 20845361 ~ 20853383 (-) False rgn

Expression Profile