RNA id: unassigned_transcript_1596


Basic Information

Item Value
RNA id unassigned_transcript_1596
length 82
RNA type tRNA
GC content 0.56
exon number 1
gene id trnas-uga_27
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15938385 ~ 15938466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTgatggccgagtggttaaggcgttGGACTTGAAATCCAATGGGGTTTCCCAGCGCAGGTTCAAACCCTGCTCACAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319214 lncRNA upstream 54375 15883763 ~ 15884010 (+) True G235152
TU319126 lncRNA upstream 254895 15676977 ~ 15683490 (+) True LOC120554272
XR_005638343.1 lncRNA upstream 255570 15677238 ~ 15682815 (+) False LOC120554272
TU319121 lncRNA upstream 271029 15666872 ~ 15667356 (+) True G235074
TU319100 lncRNA upstream 323832 15614216 ~ 15614553 (+) True G235056
XR_005638350.1 lncRNA downstream 186995 16125461 ~ 16126641 (+) True LOC120554276
TU319242 lncRNA downstream 187353 16125819 ~ 16126791 (+) False LOC120554276
TU319250 lncRNA downstream 257096 16195562 ~ 16195700 (+) True G235185
TU319285 lncRNA downstream 282954 16221420 ~ 16222735 (+) True G235216
TU319332 lncRNA downstream 384375 16322841 ~ 16324217 (+) False G235243
XM_039792985.1 mRNA upstream 57071 15854568 ~ 15881314 (+) False LOC120554228
XM_039792987.1 mRNA upstream 57071 15854568 ~ 15881314 (+) False LOC120554228
XM_039792986.1 mRNA upstream 57071 15861239 ~ 15881314 (+) True LOC120554228
XM_039793001.1 mRNA upstream 82246 15841334 ~ 15856139 (+) False LOC120554235
XM_039793006.1 mRNA upstream 213341 15708724 ~ 15725044 (+) False LOC120554235
XM_039793028.1 mRNA downstream 46968 15985434 ~ 15992736 (+) True LOC120554249
XM_039793027.1 mRNA downstream 46968 15985434 ~ 15992736 (+) False LOC120554249
XM_039792544.1 mRNA downstream 61824 16000290 ~ 16033713 (+) True LOC120553995
XM_039792932.1 mRNA downstream 145943 16084409 ~ 16100512 (+) True LOC120554201
XM_039793029.1 mRNA downstream 163369 16101835 ~ 16121008 (+) True LOC120554250
unassigned_transcript_1595 other upstream 4669 15933635 ~ 15933716 (+) True trnas-uga_26
unassigned_transcript_1594 other upstream 7481 15930823 ~ 15930904 (+) True trnas-uga_25
unassigned_transcript_1593 other upstream 8018 15930294 ~ 15930367 (+) True trnat-agu_17
TU318854 other upstream 1028310 14806544 ~ 14910075 (+) False LOC120554715
TU318853 other upstream 1100294 14806544 ~ 14838091 (+) True LOC120554715
unassigned_transcript_1597 other downstream 2397 15940863 ~ 15940943 (+) True trnas-uga_28
unassigned_transcript_1598 other downstream 4857 15943323 ~ 15943404 (+) True trnas-uga_29
unassigned_transcript_1599 other downstream 7327 15945793 ~ 15945874 (+) True trnas-uga_30
unassigned_transcript_1600 other downstream 9793 15948259 ~ 15948340 (+) True trnas-uga_31
unassigned_transcript_1601 other downstream 12259 15950725 ~ 15950806 (+) True trnas-uga_32