RNA id: unassigned_transcript_1652


Basic Information

Item Value
RNA id unassigned_transcript_1652
length 74
RNA type tRNA
GC content 0.50
exon number 1
gene id trnat-agu_44
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16509165 ~ 16509238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTGGATTAGTTGGTGAAAGTGCCTGTCTAGTAAACAGGAgatcctgggttcaaatcccagcagcACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319333 lncRNA upstream 184917 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 184948 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 286430 16221420 ~ 16222735 (+) True G235216
TU319250 lncRNA upstream 313465 16195562 ~ 16195700 (+) True G235185
TU319242 lncRNA upstream 382374 16125819 ~ 16126791 (+) False LOC120554276
XR_005638354.1 lncRNA downstream 54189 16563427 ~ 16566044 (+) True LOC120554281
TU319398 lncRNA downstream 84960 16594198 ~ 16594849 (+) True G235284
TU319436 lncRNA downstream 330948 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 371401 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 425561 16934799 ~ 16935666 (+) True G235332
XM_039792974.1 mRNA upstream 7880 16494132 ~ 16501285 (+) True LOC120554222
XM_039792998.1 mRNA upstream 58245 16388697 ~ 16450920 (+) True LOC120554234
XM_039792999.1 mRNA upstream 115153 16388697 ~ 16394012 (+) False LOC120554234
XM_039793000.1 mRNA upstream 115153 16388697 ~ 16394012 (+) False LOC120554234
XM_039793039.1 mRNA upstream 288479 16201422 ~ 16220686 (+) True LOC120554255
XM_039792996.1 mRNA downstream 51813 16561051 ~ 16612671 (+) False LOC120554234
XM_039792997.1 mRNA downstream 51813 16561051 ~ 16612671 (+) False LOC120554234
XM_039792992.1 mRNA downstream 89606 16598844 ~ 16612671 (+) False LOC120554234
XM_039793010.1 mRNA downstream 134404 16643642 ~ 16658812 (+) False LOC120554238
XM_039793009.1 mRNA downstream 134405 16643643 ~ 16658812 (+) True LOC120554238
unassigned_transcript_1651 other upstream 252 16508841 ~ 16508913 (+) True trnak-cuu_35
unassigned_transcript_1650 other upstream 1199 16507893 ~ 16507966 (+) True trnat-agu_43
unassigned_transcript_1649 other upstream 1524 16507569 ~ 16507641 (+) True trnak-cuu_34
unassigned_transcript_1648 other upstream 2471 16506621 ~ 16506694 (+) True trnat-agu_42
unassigned_transcript_1646 other upstream 7012 16502072 ~ 16502153 (+) True trnas-uga_33
unassigned_transcript_1653 other downstream 2552 16511790 ~ 16511862 (+) True trnak-cuu_36
unassigned_transcript_1654 other downstream 2868 16512106 ~ 16512179 (+) True trnat-agu_45
unassigned_transcript_1655 other downstream 3821 16513059 ~ 16513132 (+) True trnak-cuu_37
unassigned_transcript_1656 other downstream 4396 16513634 ~ 16513706 (+) True trnak-cuu_38
unassigned_transcript_1657 other downstream 4736 16513974 ~ 16514047 (+) True trnat-agu_46