RNA id: unassigned_transcript_1677


Basic Information

Item Value
RNA id unassigned_transcript_1677
length 73
RNA type tRNA
GC content 0.49
exon number 1
gene id trnat-ugu_43
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16760358 ~ 16760430 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTAGCTTAGTGGTTAAAGCGCCTGTCTTGTAAACAGGAgatcctgggttcaaatcccatcaGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319398 lncRNA upstream 165509 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 194314 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 436110 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 436141 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 537623 16221420 ~ 16222735 (+) True G235216
TU319436 lncRNA downstream 79756 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 120209 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 174369 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 372686 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 422925 17183355 ~ 17204668 (+) True LOC120554285
XM_039793014.1 mRNA upstream 8842 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA upstream 8842 16739032 ~ 16751516 (+) False LOC120554241
XM_039793015.1 mRNA upstream 76847 16681028 ~ 16683511 (+) True LOC120554242
XM_039793035.1 mRNA upstream 85668 16659803 ~ 16674690 (+) False LOC120554253
XM_039793185.1 mRNA downstream 19574 16780004 ~ 16782236 (+) True LOC120554340
XM_039793018.1 mRNA downstream 157532 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA downstream 157532 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA downstream 157533 16917963 ~ 16932606 (+) True LOC120554243
XM_039792940.1 mRNA downstream 220607 16981037 ~ 17000130 (+) True LOC120554204
unassigned_transcript_1676 other upstream 3721 16756565 ~ 16756637 (+) True trnat-cgu_20
unassigned_transcript_1674 other upstream 30668 16729618 ~ 16729690 (+) True trnat-cgu_18
unassigned_transcript_1672 other upstream 62417 16697869 ~ 16697941 (+) True trnat-cgu_17
unassigned_transcript_1671 other upstream 63238 16697047 ~ 16697120 (+) True trnat-agu_54
unassigned_transcript_1670 other upstream 137282 16623003 ~ 16623076 (+) True trnat-agu_53
unassigned_transcript_1678 other downstream 1069 16761499 ~ 16761572 (+) True trnat-agu_56
unassigned_transcript_1679 other downstream 2106 16762536 ~ 16762608 (+) True trnat-cgu_21
unassigned_transcript_1680 other downstream 24408 16784838 ~ 16784911 (+) True trnat-agu_57
unassigned_transcript_1681 other downstream 24984 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1682 other downstream 25578 16786008 ~ 16786081 (+) True trnat-agu_58

Expression Profile