RNA id: unassigned_transcript_1680


Basic Information

Item Value
RNA id unassigned_transcript_1680
length 74
RNA type tRNA
GC content 0.50
exon number 1
gene id trnat-agu_57
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16784838 ~ 16784911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTGGCTTAGTTGGTTAAAGTGCCTGTCTAGTAATCAGGAGATCCTGGGTTCAAGTCCCAGCAGCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319398 lncRNA upstream 189989 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 218794 16563427 ~ 16566044 (+) True LOC120554281
TU319333 lncRNA upstream 460590 16322841 ~ 16324248 (+) True G235243
TU319332 lncRNA upstream 460621 16322841 ~ 16324217 (+) False G235243
TU319285 lncRNA upstream 562103 16221420 ~ 16222735 (+) True G235216
TU319436 lncRNA downstream 55275 16840186 ~ 16840829 (+) True G235321
TU319439 lncRNA downstream 95728 16880639 ~ 16932584 (+) False LOC120554243
TU319447 lncRNA downstream 149888 16934799 ~ 16935666 (+) True G235332
XR_005638359.1 lncRNA downstream 348205 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 398444 17183355 ~ 17204668 (+) True LOC120554285
XM_039793185.1 mRNA upstream 2602 16780004 ~ 16782236 (+) True LOC120554340
XM_039793014.1 mRNA upstream 33322 16734661 ~ 16751516 (+) True LOC120554241
XM_039793013.1 mRNA upstream 33322 16739032 ~ 16751516 (+) False LOC120554241
XM_039793015.1 mRNA upstream 101327 16681028 ~ 16683511 (+) True LOC120554242
XM_039793035.1 mRNA upstream 110148 16659803 ~ 16674690 (+) False LOC120554253
XM_039793018.1 mRNA downstream 133051 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA downstream 133051 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA downstream 133052 16917963 ~ 16932606 (+) True LOC120554243
XM_039792940.1 mRNA downstream 196126 16981037 ~ 17000130 (+) True LOC120554204
XM_039793007.1 mRNA downstream 272777 17057688 ~ 17099481 (+) True LOC120554236
unassigned_transcript_1679 other upstream 22230 16762536 ~ 16762608 (+) True trnat-cgu_21
unassigned_transcript_1678 other upstream 23266 16761499 ~ 16761572 (+) True trnat-agu_56
unassigned_transcript_1677 other upstream 24408 16760358 ~ 16760430 (+) True trnat-ugu_43
unassigned_transcript_1676 other upstream 28201 16756565 ~ 16756637 (+) True trnat-cgu_20
unassigned_transcript_1674 other upstream 55148 16729618 ~ 16729690 (+) True trnat-cgu_18
unassigned_transcript_1681 other downstream 503 16785414 ~ 16785486 (+) True trnat-ugu_44
unassigned_transcript_1682 other downstream 1097 16786008 ~ 16786081 (+) True trnat-agu_58
unassigned_transcript_1683 other downstream 33693 16818604 ~ 16818677 (+) True trnat-agu_59
unassigned_transcript_1691 other downstream 165510 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1692 other downstream 166786 16951697 ~ 16951769 (+) True trnat-cgu_25