RNA id: unassigned_transcript_1686



Basic Information


Item Value
RNA id unassigned_transcript_1686
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnat-cgu_22
representative True

Chromosome Information


Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16871856 ~ 16871928 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCGCTGTAGCTTAGAGGTTAAAGCGCCTGTCTCGTAAACAGGAgatcctgggttcaaatcccagcagTGCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU319545 lncRNA downstream 96311 16766666 ~ 16775545 (-) True G235413
TU319479 lncRNA downstream 160664 16681727 ~ 16711192 (-) True G235357
TU319516 lncRNA downstream 258145 16611983 ~ 16613711 (-) True G235387
XR_005638344.1 lncRNA downstream 304840 16562804 ~ 16567016 (-) True LOC120554273
TU319560 lncRNA upstream 1907 16873835 ~ 16876854 (-) True G235427
TU319562 lncRNA upstream 4081 16876009 ~ 16916150 (-) False LOC120554268
XR_005638338.1 lncRNA upstream 41670 16913598 ~ 16916699 (-) True LOC120554268
TU319609 lncRNA upstream 303694 17175622 ~ 17175960 (-) True G235471
TU319657 lncRNA upstream 394332 17266260 ~ 17330177 (-) True G235512
XM_039792956.1 mRNA downstream 17721 16410760 ~ 16854135 (-) False LOC120554212
XM_039792952.1 mRNA downstream 17723 16824657 ~ 16854133 (-) True LOC120554212
XM_039793051.1 mRNA downstream 129568 16736186 ~ 16742288 (-) False LOC120554263
XM_039793050.1 mRNA downstream 129568 16739669 ~ 16742288 (-) False LOC120554263
XM_039792942.1 mRNA downstream 233661 16616703 ~ 16638195 (-) True LOC120554206
XM_039792547.1 mRNA upstream 13381 16885309 ~ 16904529 (-) True LOC120553998
XM_039792991.1 mRNA upstream 144276 17016204 ~ 17026731 (-) True LOC120554233
XM_039792990.1 mRNA upstream 272043 17143971 ~ 17160195 (-) True LOC120554231
XM_039792941.1 mRNA upstream 313459 17185387 ~ 17208313 (-) True LOC120554205
XM_039792979.1 mRNA upstream 346263 17218191 ~ 17234702 (-) True LOC120554225
unassigned_transcript_1685 other downstream 7350 16864433 ~ 16864506 (-) True trnat-agu_60
unassigned_transcript_1684 other downstream 7907 16863877 ~ 16863949 (-) True trnat-ugu_45
unassigned_transcript_1675 other downstream 115791 16755993 ~ 16756065 (-) True trnat-cgu_19
XR_005638337.1 other downstream 129568 16736186 ~ 16742288 (-) True LOC120554263
unassigned_transcript_1673 other downstream 143349 16728434 ~ 16728507 (-) True trnat-agu_55
unassigned_transcript_1687 other upstream 1113 16873041 ~ 16873114 (-) True trnat-agu_61
unassigned_transcript_1688 other upstream 35485 16907413 ~ 16907485 (-) True trnat-cgu_23
unassigned_transcript_1689 other upstream 35822 16907750 ~ 16907822 (-) True trnat-cgu_24
unassigned_transcript_1690 other upstream 36417 16908345 ~ 16908418 (-) True trnat-agu_62
TU319472 other upstream 192374 17064302 ~ 17103517 (-) True G235350