RNA id: unassigned_transcript_1696


Basic Information

Item Value
RNA id unassigned_transcript_1696
length 74
RNA type tRNA
GC content 0.50
exon number 1
gene id trnat-agu_65
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17054696 ~ 17054769 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTGTGGCTTAGTTGGTTAAAGTGCCTGTCTAGTAAACAGGAgatcctgggttcaaatcccagcagcACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319447 lncRNA upstream 119030 16934799 ~ 16935666 (+) True G235332
TU319439 lncRNA upstream 122112 16880639 ~ 16932584 (+) False LOC120554243
TU319436 lncRNA upstream 213867 16840186 ~ 16840829 (+) True G235321
TU319398 lncRNA upstream 459847 16594198 ~ 16594849 (+) True G235284
XR_005638354.1 lncRNA upstream 488652 16563427 ~ 16566044 (+) True LOC120554281
XR_005638359.1 lncRNA downstream 78347 17133116 ~ 17146492 (+) True LOC120554286
XR_005638358.1 lncRNA downstream 128586 17183355 ~ 17204668 (+) True LOC120554285
TU319642 lncRNA downstream 258240 17313009 ~ 17313865 (+) True G235497
TU319646 lncRNA downstream 290696 17345465 ~ 17345923 (+) True G235501
TU319675 lncRNA downstream 295096 17349865 ~ 17350086 (+) True G235530
XM_039792940.1 mRNA upstream 54566 16981037 ~ 17000130 (+) True LOC120554204
XM_039793018.1 mRNA upstream 122090 16917962 ~ 16932606 (+) False LOC120554243
XM_039793019.1 mRNA upstream 122090 16917962 ~ 16932606 (+) False LOC120554243
XM_039793017.1 mRNA upstream 122090 16917963 ~ 16932606 (+) True LOC120554243
XM_039793185.1 mRNA upstream 272460 16780004 ~ 16782236 (+) True LOC120554340
XM_039793007.1 mRNA downstream 2919 17057688 ~ 17099481 (+) True LOC120554236
XM_039793038.1 mRNA downstream 58647 17113416 ~ 17124906 (+) True LOC120554254
XM_039792548.1 mRNA downstream 114616 17169385 ~ 17178813 (+) True LOC120553999
XM_039792949.1 mRNA downstream 166540 17221309 ~ 17268297 (+) False LOC120554211
XM_039792948.1 mRNA downstream 179278 17234047 ~ 17268297 (+) True LOC120554211
unassigned_transcript_1695 other upstream 2090 17052534 ~ 17052606 (+) True trnat-ugu_46
unassigned_transcript_1694 other upstream 25252 17029372 ~ 17029444 (+) True trnat-cgu_26
unassigned_transcript_1693 other upstream 25634 17028989 ~ 17029062 (+) True trnat-agu_64
unassigned_transcript_1692 other upstream 102927 16951697 ~ 16951769 (+) True trnat-cgu_25
unassigned_transcript_1691 other upstream 104202 16950421 ~ 16950494 (+) True trnat-agu_63
unassigned_transcript_1697 other downstream 537 17055306 ~ 17055378 (+) True trnat-cgu_27
unassigned_transcript_1698 other downstream 18279 17073048 ~ 17073120 (+) True trnat-ugu_47
unassigned_transcript_1699 other downstream 18884 17073653 ~ 17073725 (+) True trnat-cgu_28
unassigned_transcript_1700 other downstream 19242 17074011 ~ 17074083 (+) True trnat-cgu_29
unassigned_transcript_1701 other downstream 49799 17104568 ~ 17104641 (+) True trnat-agu_66