RNA id: unassigned_transcript_1706


Basic Information

Item Value
RNA id unassigned_transcript_1706
length 873
RNA type V_gene_segment
GC content 0.53
exon number 5
gene id LOC120555119
representative False

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 26383 ~ 112045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgactttgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGGATGTTCATGGTGGGAGCTATCTACActggtaccaacagagagatggagaaactcctAAACTGCTCATTTACTATACTAGCACTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTTTCATGTTATCAACAGCCAgtatgtgtgGACTTTTggtggagGAACCAGACTCAATGTTGGAAGTGATGTCCGTCCCACCCTGACGGTGCTGCCCCCCTCCAGTGATGAGCTGCTGAAGGGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagcagctgggaggagagcaggagcCCCGGGGTGCTGGGGAAGGACGGCAAATACAGCTGGAGCAGCACCCTGAGGCTCCCTAAAGACCAGTGGGAGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGACTCCGCTCTCAGAGACTCTGAGGAGAGACCAGTGTGACTGATCTcagtctgctctctctctctctctctctctctctctctctctctctctctctctctctctctcactgtctaaTTACATGTTTCATTGATAGTTGTGTAGCTTGTTGTActtttgatgatgtcatcacaatAAATCCCTTTTCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322866 lncRNA downstream 11191 123122 ~ 139332 (+) True G237627
TU322819 lncRNA downstream 12391 124322 ~ 139761 (+) True G237622
TU322820 lncRNA downstream 12391 124322 ~ 139761 (+) False G237622
TU322821 lncRNA downstream 12391 124322 ~ 139761 (+) False G237622
TU322822 lncRNA downstream 12391 124322 ~ 139761 (+) False G237622
unassigned_transcript_1705 other upstream 15194 10675 ~ 11189 (+) True LOC120555132
unassigned_transcript_1708 other downstream 34076 146007 ~ 146527 (+) True LOC120555134
TU322788 other downstream 41548 153479 ~ 154318 (+) False G237621
unassigned_transcript_1710 other downstream 57469 169400 ~ 169894 (+) True LOC120555157
unassigned_transcript_1711 other downstream 66448 178379 ~ 178996 (+) True LOC120555149
TU322922 other downstream 66465 178396 ~ 178985 (+) False LOC120555149

Expression Profile