RNA id: TU322785


Basic Information

Item Value
RNA id TU322785
length 834
lncRNA type inter_gene
GC content 0.53
exon number 5
gene id G237621
representative False

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 153479 ~ 668474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagagtccagaggccagtacacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGAATGTTTATACTTGGGGCAGCAATCACGCGTTAGCctggtaccaacagagagatggagaaactcctAAACTGCTCATTTACTATGCTACTACTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTAACACTATCCCAACAGTCAGTGGGTgtacACGTTCggtggaggaaccagactgaATGTTGGAAGTGATGTCCGTCCCACCCTGACGGTGCTGCCCCCCTCCAGTGAGGAGCTGCTGAAGGGGAAGGCCACACTCATGTGCCTGGCCAACAAGGGCTTCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagcagctgggaggagagcaggagcCAGGGTGCTGGGGAAGGACGGCAAATACAGCTGGAGCAGCACCCTGAGGCTCCCTAAAGACCAGTGGGAGAAGGTGGGCTCTGTGACCTGTGAGGCCACCGGGCGCCCAGACTCCGctctcagagacactgaggagagaCCAGTGTGACTGATCTcagtctgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctaattACATGTTTCATTGATAGTTGTGTAGCTTGTTGTActtttgatgatgtcatcacaatAAATCCCTTTTCATCAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322828 lncRNA upstream 43710 464293 ~ 484541 (+) False G237623
TU322834 lncRNA upstream 44108 464293 ~ 484143 (+) False G237623
TU322943 lncRNA upstream 79564 442868 ~ 448687 (+) True G237696
TU322878 lncRNA upstream 107976 419897 ~ 420275 (+) True G237637
TU322871 lncRNA upstream 133789 393955 ~ 394462 (+) True G237631
unassigned_transcript_1753 other upstream 15364 512218 ~ 512887 (+) True LOC120555141
unassigned_transcript_1752 other upstream 45389 482243 ~ 482862 (+) True LOC120555140
TU322887 other upstream 45399 482235 ~ 482852 (+) False LOC120555140
unassigned_transcript_1750 other upstream 76315 451021 ~ 451936 (+) True LOC120555146
unassigned_transcript_1749 other upstream 103378 424392 ~ 424873 (+) True LOC120555110

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU113218 False 995 lncRNA 0.47 3 CM030131.1 6733235 ~ 7184824 (-)