RNA id: TU322809



Basic Information


Item Value
RNA id TU322809
length 552
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G237621
representative False

Chromosome Information


Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 153479 ~ 668474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtccttcatgacaacagaagacagaaatcctcctcatcaaaaacatgactttgatctccgtcctcatctggactctcctctgctgctgcttcacaggtaaagtccagagaatcaaactcctctcctctatcaacatccgtccctctgaaatgaagccgactaaaccgtgacgctgctttatgtttttgtctctgtatcctcagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGGCTGTTTATGGTTCTAACAGGTTAGCctggtaccaacagagagatggagaaactcctAAACTGCTCATTTACTATGCTACTACTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTAACACTATCCCAACAGTCAGTGGGTGTTgacacagtgaaaaagcgtcgtacaaaaacctccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322943 lncRNA upstream 31680 442868 ~ 448687 (+) True G237696
TU322878 lncRNA upstream 60092 419897 ~ 420275 (+) True G237637
TU322871 lncRNA upstream 85905 393955 ~ 394462 (+) True G237631
TU322895 lncRNA upstream 101413 378434 ~ 378954 (+) False LOC120555106
TU322858 lncRNA upstream 163588 262995 ~ 316779 (+) True G237624
TU322804 lncRNA downstream 3014 537731 ~ 651704 (+) False G237621
TU322868 lncRNA downstream 8034 542751 ~ 589126 (+) True G237629
TU322776 lncRNA downstream 19313 554030 ~ 668474 (+) True G237621
TU322781 lncRNA downstream 19313 554030 ~ 651704 (+) False G237621
TU322782 lncRNA downstream 19521 554238 ~ 651704 (+) False G237621
unassigned_transcript_1750 other upstream 28431 451021 ~ 451936 (+) True LOC120555146
unassigned_transcript_1749 other upstream 55494 424392 ~ 424873 (+) True LOC120555110
unassigned_transcript_1748 other upstream 71794 408092 ~ 408573 (+) True LOC120555108
unassigned_transcript_1745 other upstream 90117 389760 ~ 390250 (+) True LOC120555107
unassigned_transcript_1744 other upstream 101320 376531 ~ 379047 (+) True LOC120555106
unassigned_transcript_1756 other downstream 2858 537575 ~ 538487 (+) True LOC120555128
unassigned_transcript_1757 other downstream 28136 562853 ~ 636019 (+) True LOC120555117
TU322794 other downstream 34418 569135 ~ 651704 (+) False G237621
unassigned_transcript_1758 other downstream 78724 613441 ~ 614109 (+) True LOC120555137
unassigned_transcript_1759 other downstream 83065 617782 ~ 643704 (+) True LOC120555115

Expression Profile