RNA id: TU322845


Basic Information

Item Value
RNA id TU322845
length 1884
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G237623
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 14747 ~ 484541 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTGAGGGGAAAgagataaacagagagagagagagagagagagagagagagagagagagaaaaaaaaaaaaaaaaaaatagcagagAGCAGACTGAGATCAGTATCAGAGTGAAACCAGTAGCAGAGTCCCAGTGAGTCAGGTCAGGACTGGGAACACTGGtctctcctcagtgtctctgagagTGGAGTCTGGGAGCCCTGGGTGGCCTCACAGGTCACAGAGCCCACCTTCTCCCACTGGTCTTTAGGGAGCCTCAGGGTGCTGCTCCAGCTGTATTTGCCGTCCTTCCCCAGCACCCCGGGgctcctgctctcctcccagctgctgctgctgctgctgccgtccaCCTTCCAGGCCAGACTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGGCACATGAGCGTGGCCTTCCCCTGCAGCAGCTCATCACTGGAGGGGGGCAGCACCGTCAGGGTGGGACGGACATCACCTAGGAGACACCAATCAGCTTAGAGGACAGGGAccacacagctgtcaatcaaccaGCAGACACTTGGACACCTTGACTGTGTGAGAGTTGGTTTTCTCCTTTAAGGAGTTTCTGTCAGATGGTTTTTCTGCTCCAccagtcactcactcacacattgttTCACTTCCCTTTAAGAAGCCTCTCATGCAAATCAGCACAGAGAGAATCATCTCCACAATGAGCTGATATATATCAAACTATacactggaaataaaatgtcaacttttgGACAAATCTTTAAACCTCCAAATCAAAATCATCACCAACCTAACTATACATTACTTTAAAGTATTTACTATAATAGaaacaaatccagaaaatgagCGGACAACATCAAATGTCCTTCATGTGGATTTCGATCATCATTACCAAACTGTTCAAATAGTTTTCAAACTTTGAAACAATACATGACACAGTAAAGAGATGTTGCACATTTTCAAATACCGATCTTTATCTTTGCTCTGTTCAATTGTTTGAATATTCGAATCTTCATTTGCTTTAAACAGTTATCATTGATgtggaaaattaaaaatgaatcttGTAGAACAGGTTTTCAGTTTTATCTTTTCCACACTTCAAGTCATTTAAATTTCAGTTTGACAGAAATGTGTAAAGAAATGTTTAGTGAAGCTGCTCTGAGTTAGTCTCCACGATAAAGGAGGAGAAATAAAAACGTGAATACTAAGAGATATTTTATTAACTGTAAACtgaatttaaaacattactttaCAATATTTCCAACATAGTTTTTAGTATTTGTGCAGAAACTTACTTCCAAATTCcagtctggttcctccaccGAACGTGTacaaCCACTGACTGTTGATCTGATGTCCactctgacagtagtaaactgctgcatcttcagtctggactccactgatggtcagagtgaagtcagagtttgatccactgcctgtaaaacgaGCTGGAATCCCTGATTGTCGAGTGCTAGCATAGTAAATGAGCAGTTTAGGAGTTTCGccatctctctgttggtaccagGCTAACCTGTGGTAGCCATCACCACTCCAAACATTCTGActggtcctacagctgatggagacggagcctcccagagcagagctcactgctccaggctgagtcactgtgacctggcctctggactctgaggatacagagacaaaaacataaagcagcgtcacggtttagtcggcttcatttcagagggacggatgttgatagaggagaggagtttgattctctggactttacctgtgaagcagcagcagaggagagtccagatgaggacggagatcaaagtcatgtttttgatgaggaggatttctgtgtcttctgttgtcatgaaggacagctgtcagtcatccagtgttcaactctcaggactata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638642.1 lncRNA downstream 3157 108090 ~ 108490 (+) True LOC120555179
TU322866 lncRNA downstream 18189 123122 ~ 139332 (+) True G237627
TU322819 lncRNA downstream 19389 124322 ~ 139761 (+) True G237622
TU322820 lncRNA downstream 19389 124322 ~ 139761 (+) False G237622
TU322821 lncRNA downstream 19389 124322 ~ 139761 (+) False G237622
unassigned_transcript_1705 other upstream 3558 10675 ~ 11189 (+) True LOC120555132
unassigned_transcript_1708 other downstream 41074 146007 ~ 146527 (+) True LOC120555134
TU322788 other downstream 48546 153479 ~ 154318 (+) False G237621
unassigned_transcript_1710 other downstream 64467 169400 ~ 169894 (+) True LOC120555157
unassigned_transcript_1711 other downstream 73446 178379 ~ 178996 (+) True LOC120555149
TU322922 other downstream 73463 178396 ~ 178985 (+) False LOC120555149

Expression Profile