RNA id: unassigned_transcript_1752


Basic Information

Item Value
RNA id unassigned_transcript_1752
length 404
RNA type V_gene_segment
GC content 0.47
exon number 2
gene id LOC120555140
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 482235 ~ 482862 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGGACTTTCAGAGACACTGACACGCTGGCagcatgatgatgatgtcactgatTCTACTGCTGGCCACCCTGGGGCTCCTTGTTCAGGGTTCATCAGGAGAAATCATCCTGACTCAGTCTCCTGGATCTCAGTCTGTTGCTCCAGGACAGTCTGTGTCTATCAGATGTAAAGCCAGTTCAACTGTTAGTACTAGCGTACTCAGCTGGTACCTTCAGAAACCTGGAGAATCTCCTAAACTCCTGATTTATTCAACTTCAACCCGTCAGTCTGGAGTTTCCGATCGTTTTAGTGGAAGTGGATCAAACACTGACTACACTCTGTCCATCAGTGGAGTtcagactgaagatgcagcagtttactactgtcagcAATATCAAAGCTATCCAGTCACACAGTGATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322943 lncRNA upstream 33556 442868 ~ 448687 (+) True G237696
TU322878 lncRNA upstream 61968 419897 ~ 420275 (+) True G237637
TU322871 lncRNA upstream 87781 393955 ~ 394462 (+) True G237631
TU322895 lncRNA upstream 103289 378434 ~ 378954 (+) False LOC120555106
TU322858 lncRNA upstream 165464 262995 ~ 316779 (+) True G237624
TU322798 lncRNA downstream 4962 487824 ~ 651704 (+) False G237621
TU322944 lncRNA downstream 17765 500627 ~ 559660 (+) True G237697
TU322795 lncRNA downstream 21288 504150 ~ 651704 (+) False G237621
XR_005638643.1 lncRNA downstream 29150 512012 ~ 536359 (+) True LOC120555180
TU322785 lncRNA downstream 45389 528251 ~ 651704 (+) False G237621
unassigned_transcript_1750 other upstream 30307 451021 ~ 451936 (+) True LOC120555146
unassigned_transcript_1749 other upstream 57370 424392 ~ 424873 (+) True LOC120555110
unassigned_transcript_1748 other upstream 73670 408092 ~ 408573 (+) True LOC120555108
unassigned_transcript_1745 other upstream 91993 389760 ~ 390250 (+) True LOC120555107
unassigned_transcript_1744 other upstream 103196 376531 ~ 379047 (+) True LOC120555106
unassigned_transcript_1753 other downstream 29356 512218 ~ 512887 (+) True LOC120555141
unassigned_transcript_1755 other downstream 51350 534212 ~ 534716 (+) True LOC120555160
unassigned_transcript_1756 other downstream 54713 537575 ~ 538487 (+) True LOC120555128
unassigned_transcript_1757 other downstream 79991 562853 ~ 636019 (+) True LOC120555117
TU322794 other downstream 86273 569135 ~ 651704 (+) False G237621

Expression Profile