RNA id: TCONS_00007127


Basic Information

Item Value
RNA id TCONS_00007127
length 720
RNA type nonsense_mediated_decay
GC content 0.55
exon number 5
gene id XLOC_003667
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 40649412 ~ 40674070 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCAGAAAGGACGAAAAAAGATGAAACGTTAAACAGCAGCGTCAACGCGATGCGCCGTCCCGTCTGCTGCCTGCAACCCAGTAATGCATGAAGAGCATCCCGGATAAAGTGTGATCAGAATGTCATCTCCTGGAATGGGGACCCCAAGCGACCCCCTGCTGTCCAGTCCTGTAGGGGGGAAGTTCGGGTCCGCTCAGGATGCCACTTGGAGACCCACTTTATCCAAAACCTCCAGTTTCCCAACATCCACCACACGGCACCTCAGTCACAGAGCCAACAACTTCCAGAGCTCCTCTTCAACGGCTGCATTCTGTTCGGGATCGAGTTCAGCTACGCGATGGAGACGGCGTATGTCACACCGGTGTTACTTCAGATGGGCCTGCCGGACCAGTTCTACAGCCTCGTGTGGTTTATCAGTCCCATTTTAGGATTCCTCCTTCAGCCGATTCTCGGGGCCTGGAGTGACCGGTGTACATCTCGCTTTGGCCGTAGGAGACCTTTTATTTTTGCCCTGGCCATTGgggCTCTGCTGGGTCTAACACTGGTGTTGAATGGAAGAGACATTGGATCTGCGCTGGCTGACACCACTCTGGATCATAAGTGGGGGATCGTGCTGACGGTGTGCGGTGTGGTGCTGATGGACTTCAGTGCAGACTCAGCCGACAATCCCAGCCATGCCTACATGATGGATGTGTGCAGCCCAGAGGACCAGGACCGAG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008506 sucrose molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2152 Predicted to enable sucrose:proton symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC45A1 (solute carrier family 45 member 1).

Ensembl:

ensembl_id ENSDART00000173156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007123 lncRNA upstream 46384 40597563 ~ 40603087 (+) True XLOC_003664
TCONS_00008674 lncRNA upstream 215391 40220055 ~ 40434080 (+) True XLOC_003662
TCONS_00008673 lncRNA upstream 532825 40111481 ~ 40116646 (+) True XLOC_003659
TCONS_00007113 lncRNA upstream 650673 39993997 ~ 39998798 (+) True XLOC_003657
TCONS_00007112 lncRNA upstream 672343 39969304 ~ 39977128 (+) False XLOC_003657
TCONS_00008675 lncRNA downstream 209084 40864955 ~ 40865542 (+) True XLOC_003669
TCONS_00008676 lncRNA downstream 235810 40891681 ~ 40932395 (+) False XLOC_003671
TCONS_00008677 lncRNA downstream 235810 40891681 ~ 40950147 (+) False XLOC_003671
TCONS_00007132 lncRNA downstream 239823 40895694 ~ 40905200 (+) False XLOC_003671
TCONS_00007133 lncRNA downstream 241455 40897326 ~ 40899889 (+) True XLOC_003672
TCONS_00007124 mRNA upstream 7684 40617896 ~ 40641787 (+) True XLOC_003666
TCONS_00007119 mRNA upstream 43603 40530748 ~ 40605868 (+) False XLOC_003664
TCONS_00007121 mRNA upstream 44301 40544269 ~ 40605170 (+) False XLOC_003664
TCONS_00007120 mRNA upstream 44301 40544269 ~ 40605170 (+) False XLOC_003664
TCONS_00007122 mRNA upstream 71216 40573943 ~ 40578255 (+) True XLOC_003665
TCONS_00007128 mRNA downstream 1741 40657612 ~ 40663238 (+) True XLOC_003667
TCONS_00007129 mRNA downstream 156719 40812590 ~ 40847615 (+) False XLOC_003668
TCONS_00007130 mRNA downstream 175749 40831620 ~ 40844026 (+) True XLOC_003668
TCONS_00007134 mRNA downstream 408951 41064822 ~ 41067789 (+) True XLOC_003673
TCONS_00007135 mRNA downstream 433703 41089574 ~ 41104643 (+) False XLOC_003674
TCONS_00007097 other upstream 1845733 38803611 ~ 38803738 (+) True XLOC_003642
TCONS_00007094 other upstream 2060905 38588451 ~ 38588566 (+) True XLOC_003640
TCONS_00007079 other upstream 2998507 37638982 ~ 37650964 (+) False XLOC_003630
TCONS_00007082 other upstream 2999443 37647553 ~ 37650028 (+) True XLOC_003630
TCONS_00007077 other upstream 3000368 37638980 ~ 37649103 (+) False XLOC_003630
TCONS_00007131 other downstream 233309 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007137 other downstream 454798 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other downstream 479738 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007149 other downstream 809236 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007172 other downstream 1969500 42625371 ~ 42625487 (+) True XLOC_003703

Expression Profile

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