RNA id: unassigned_transcript_1709


Basic Information

Item Value
RNA id unassigned_transcript_1709
length 455
RNA type C_gene_segment
GC content 0.52
exon number 1
gene id LOC120555163
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 156379 ~ 156833 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAAGGCCACGCTCATGTGCCTGGCCAACAAGGGCTTCCCCCTCAGACTGGAGTCTGGCCTGGAAGGtggacggcagcagcagcagcagcagctgggaggagagcaggagcCCGGGGTGCTGGGGAGGGACGGCAAGTACAGCTGGAGCAGCACCCTGAGACTCCCTAAAGACCAGTGGGAGAAGGTGGGCTCTGTGACCTGTGAGGCCACCCAGGGCTCCCAGACTCCGctctcagagacactgaggagagaCCAGTGTTCCCAGTCCTGACCTGACTCATTGGGACTCTGCTACTGGTTTCACTCTGATACTGATCTCAGTCTGCTCTCTGCAACTCTTTACCTTTCTATCTCATTCTTTCCATCACTGTCTAATTACATGTTTCATTGATAAAgatttattgctttttaaatattttattatttcaacaCAATAAAGAACCTTTCATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323095 lncRNA downstream 2267 32771 ~ 154112 (-) True G237737
TU323068 lncRNA downstream 16596 124323 ~ 139783 (-) True G237715
TU323085 lncRNA downstream 75757 80056 ~ 80622 (-) True G237727
TU323094 lncRNA downstream 132474 15502 ~ 23905 (-) True G237736
TU323086 lncRNA upstream 26566 183399 ~ 275542 (-) True G237728
TU323090 lncRNA upstream 56909 213742 ~ 634824 (-) True G237732
TU322958 lncRNA upstream 58702 215535 ~ 246759 (-) False G237710
TU323028 lncRNA upstream 58702 215535 ~ 281082 (-) False G237710
TU323020 lncRNA upstream 85277 242110 ~ 281082 (-) False G237710
unassigned_transcript_1707 other downstream 18655 136740 ~ 137724 (-) True LOC120555092
TU323064 other downstream 19091 41756 ~ 137288 (-) False LOC120555092
TU323063 other downstream 65521 14754 ~ 90858 (-) False LOC120555092
unassigned_transcript_1712 other upstream 23299 180132 ~ 180642 (-) True LOC120555177
TU322965 other upstream 32723 189556 ~ 190959 (-) False G237710
TU323015 other upstream 32723 189556 ~ 246759 (-) False G237710
unassigned_transcript_1714 other upstream 32771 189604 ~ 190936 (-) True LOC120555168
unassigned_transcript_1722 other upstream 88477 245310 ~ 246715 (-) True LOC120555098

Expression Profile