RNA id: unassigned_transcript_1718


Basic Information

Item Value
RNA id unassigned_transcript_1718
length 366
RNA type V_gene_segment
GC content 0.50
exon number 2
gene id LOC120555096
representative True

Chromosome Information

Item Value
chromosome id NW_024375613.1
NCBI id VHII01000026.1
chromosome length 686707
location 218791 ~ 219263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgactttgatctccgtcctcatctggactctcctctgctgctgcttcacagagtccagaggccaggtcacagtgactcagcctggagcagtgagctctgctctgggaggctccgtctccatcagctgtaggaccagTCAGGCTGTTACACACATTAACTATCTAGAGtggtaccaacagagagatggCGAAACTCCTAAACTGCTCATTTACTATACTAGCACTCGACAATCAGGGATTCCAGatcgttttacaggcagtggatcaaactctgacttcactctgaccatcagtggagtccagactgaagatgcagcagtttactactgtcagagtTATCACAGTGGGGgtgtgttcacacagtga

Function

GO: NA

KEGG:

id description
ko04145 Phagosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU322863 lncRNA upstream 2953 143495 ~ 215838 (+) True G237626
TU322864 lncRNA upstream 45765 143495 ~ 173026 (+) False G237626
TU322793 lncRNA upstream 54394 158884 ~ 164397 (+) False G237621
TU322786 lncRNA upstream 59256 158884 ~ 159535 (+) False G237621
TU322862 lncRNA upstream 67310 143495 ~ 151481 (+) False G237626
TU322805 lncRNA downstream 16268 235531 ~ 651704 (+) False G237621
TU322884 lncRNA downstream 24311 243574 ~ 249263 (+) True G237641
TU322833 lncRNA downstream 25975 245238 ~ 280207 (+) False G237623
TU322838 lncRNA downstream 25975 245238 ~ 259245 (+) False G237623
TU322858 lncRNA downstream 43732 262995 ~ 316779 (+) True G237624
unassigned_transcript_1717 other upstream 4724 213580 ~ 214067 (+) True LOC120555095
unassigned_transcript_1716 other upstream 11932 206378 ~ 206859 (+) True LOC120555093
unassigned_transcript_1715 other upstream 25497 192781 ~ 193294 (+) True LOC120555127
unassigned_transcript_1713 other upstream 30293 187756 ~ 188498 (+) True LOC120555145
unassigned_transcript_1711 other upstream 39795 178379 ~ 178996 (+) True LOC120555149
unassigned_transcript_1719 other downstream 6221 225484 ~ 225956 (+) True LOC120555097
unassigned_transcript_1720 other downstream 16160 235423 ~ 235948 (+) True LOC120555122
unassigned_transcript_1721 other downstream 24151 243414 ~ 243926 (+) True LOC120555143
unassigned_transcript_1723 other downstream 29332 248595 ~ 249076 (+) True LOC120555099
unassigned_transcript_1724 other downstream 37219 256482 ~ 257112 (+) True LOC120555148

Expression Profile